In [7]:
# Set common NPTT switches for this test
# accepted threshold difference with respect to benchmark files
barshadow_threshold_diff = 0.0025
# other variables
mode_used = 'MOS'
write_barshadow_files = False
show_final_fig = True
save_final_fig = False
show_intermediary_figs = False
save_intermediary_figs = False
# Get the data
results_dict = {}
detectors = ['nrs1', 'nrs2']
for mode_config, data_set_dict in testing_data.items():
for det in detectors:
print('Testing files for detector: ', det)
data = get_artifactory_file(data_set_dict, det)
uncal_file, msa_shutter_config = data
print('Working with uncal_file: ', uncal_file)
uncal_basename = os.path.basename(uncal_file)
# Run the stage 1 pipeline
rate_object = Detector1Pipeline.call(uncal_file)
# Make sure the MSA shutter configuration file is set up correctly
if msa_shutter_config is not None:
msa_metadata = rate_object.meta.instrument.msa_metadata_file
if msa_metadata is None or msa_metadata == 'N/A':
rate_object.meta.instrument.msa_metadata_file = msa_shutter_config
# Run the stage 2 pipeline steps
try:
pipe_object = AssignWcsStep.call(rate_object)
skip_file = False
except:
print('No open slits fall on detector ', det, '\n')
skip_file = True
if not skip_file:
pipe_object = MSAFlagOpenStep.call(pipe_object)
pipe_object = Extract2dStep.call(pipe_object)
pipe_object = SourceTypeStep.call(pipe_object)
pipe_object = WavecorrStep.call(pipe_object)
pipe_object = FlatFieldStep.call(pipe_object, save_interpolated_flat=False)
pathloss_object = PathLossStep.call(pipe_object)
barshadow_object = BarShadowStep.call(pathloss_object)
# Run the validation test
%matplotlib inline
result, _, _ = nptt.calwebb_spec2_pytests.auxiliary_code.barshadow_testing.run_barshadow_tests(
pathloss_object,
barshadow_object,
barshadow_threshold_diff=barshadow_threshold_diff,
save_final_figs=save_final_fig,
show_final_figs=show_final_fig,
save_intermediary_figs=save_intermediary_figs,
show_intermediary_figs=show_intermediary_figs,
write_barshadow_files=write_barshadow_files)
else:
result = 'skipped'
# Did the test passed
print("Did barshadow validation test passed? ", result, "\n\n")
rd = {uncal_basename: result}
results_dict.update(rd)
# close all open files
psutil.Process().open_files()
closing_files = []
for fd in psutil.Process().open_files():
if data_dir.name in fd.path:
closing_files.append(fd)
for fd in closing_files:
try:
print('Closing file: ', fd)
open(fd.fd).close()
except:
print('File already closed: ', fd)
Testing files for detector: nrs1 Working with uncal_file: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w/mos_prism_nrs1_uncal.fits
2021-08-20 15:45:39,659 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf
2021-08-20 15:45:39,681 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2021-08-20 15:45:39,682 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2021-08-20 15:45:39,684 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2021-08-20 15:45:39,685 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2021-08-20 15:45:39,686 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2021-08-20 15:45:39,688 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2021-08-20 15:45:39,689 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2021-08-20 15:45:39,690 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2021-08-20 15:45:39,692 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2021-08-20 15:45:39,693 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2021-08-20 15:45:39,694 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2021-08-20 15:45:39,695 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2021-08-20 15:45:39,697 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2021-08-20 15:45:39,698 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2021-08-20 15:45:39,699 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2021-08-20 15:45:39,701 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2021-08-20 15:45:39,702 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
2021-08-20 15:45:39,803 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w/mos_prism_nrs1_uncal.fits',).
2021-08-20 15:45:39,813 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}}}
2021-08-20 15:45:39,970 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'mos_prism_nrs1_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'persat', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias', 'trapdensity', 'trappars']
2021-08-20 15:45:39,979 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dark_0086.fits'.
2021-08-20 15:45:39,981 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_gain_0019.fits'.
2021-08-20 15:45:39,983 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_linearity_0018.fits'.
2021-08-20 15:45:39,984 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_mask_0010.fits'.
2021-08-20 15:45:39,986 - stpipe.Detector1Pipeline - INFO - Prefetch for PERSAT reference file is 'N/A'.
2021-08-20 15:45:39,987 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits'.
2021-08-20 15:45:39,989 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_refpix_0022.fits'.
2021-08-20 15:45:39,991 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2021-08-20 15:45:39,992 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2021-08-20 15:45:39,992 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_saturation_0020.fits'.
2021-08-20 15:45:39,994 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_superbias_0113.fits'.
2021-08-20 15:45:39,995 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPDENSITY reference file is 'N/A'.
2021-08-20 15:45:39,996 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPPARS reference file is 'N/A'.
2021-08-20 15:45:39,997 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2021-08-20 15:45:40,409 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 4, 3200, 2048) from mos_prism_nrs1_uncal.fits>,).
2021-08-20 15:45:40,411 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:45:40,645 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2021-08-20 15:45:40,646 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2021-08-20 15:45:40,647 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2021-08-20 15:45:40,735 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 4, 3200, 2048) from mos_prism_nrs1_uncal.fits>,).
2021-08-20 15:45:40,737 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:45:40,756 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /grp/crds/cache/references/jwst/jwst_nirspec_mask_0010.fits
2021-08-20 15:45:41,203 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2021-08-20 15:45:41,320 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 4, 3200, 2048) from mos_prism_nrs1_uncal.fits>,).
2021-08-20 15:45:41,322 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:45:41,341 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /grp/crds/cache/references/jwst/jwst_nirspec_saturation_0020.fits
2021-08-20 15:45:42,162 - stpipe.Detector1Pipeline.saturation - INFO - Detected 9869 saturated pixels
2021-08-20 15:45:42,209 - stpipe.Detector1Pipeline.saturation - INFO - Detected 0 A/D floor pixels
2021-08-20 15:45:42,241 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2021-08-20 15:45:42,348 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 4, 3200, 2048) from mos_prism_nrs1_uncal.fits>,).
2021-08-20 15:45:42,350 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:45:42,351 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2021-08-20 15:45:42,352 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc done
2021-08-20 15:45:42,442 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 4, 3200, 2048) from mos_prism_nrs1_uncal.fits>,).
2021-08-20 15:45:42,444 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:45:42,464 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /grp/crds/cache/references/jwst/jwst_nirspec_superbias_0113.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/stdatamodels/validate.py:34: ValidationWarning: While validating meta.exposure.readpatt the following error occurred:
'ALLIRS2' is not one of ['ACQ1', 'ACQ2', 'BRIGHT1', 'BRIGHT2', 'DEEP2', 'DEEP8', 'FAST', 'FASTGRPAVG', 'FASTGRPAVG8', 'FASTGRPAVG16', 'FASTGRPAVG32', 'FASTGRPAVG64', 'FASTR1', 'FASTR100', 'FGS', 'FGS60', 'FGS8370', 'FGS840', 'FGSRAPID', 'FINEGUIDE', 'ID', 'MEDIUM2', 'MEDIUM8', 'NIS', 'NISRAPID', 'NRS', 'NRSIRS2', 'NRSN16R4', 'NRSN32R8', 'NRSN8R2', 'NRSRAPID', 'NRSIRS2RAPID', 'NRSRAPIDD1', 'NRSRAPIDD2', 'NRSRAPIDD6', 'NRSSLOW', 'RAPID', 'SHALLOW2', 'SHALLOW4', 'SLOW', 'SLOWR1', 'TRACK', 'ANY', 'N/A']
Failed validating 'enum' in schema:
OrderedDict([('title', 'Readout pattern'),
('type', 'string'),
('enum',
['ACQ1',
'ACQ2',
'BRIGHT1',
'BRIGHT2',
'DEEP2',
'DEEP8',
'FAST',
'FASTGRPAVG',
'FASTGRPAVG8',
'FASTGRPAVG16',
'FASTGRPAVG32',
'FASTGRPAVG64',
'FASTR1',
'FASTR100',
'FGS',
'FGS60',
'FGS8370',
'FGS840',
'FGSRAPID',
'FINEGUIDE',
'ID',
'MEDIUM2',
'MEDIUM8',
'NIS',
'NISRAPID',
'NRS',
'NRSIRS2',
'NRSN16R4',
'NRSN32R8',
'NRSN8R2',
'NRSRAPID',
'NRSIRS2RAPID',
'NRSRAPIDD1',
'NRSRAPIDD2',
'NRSRAPIDD6',
'NRSSLOW',
'RAPID',
'SHALLOW2',
'SHALLOW4',
'SLOW',
'SLOWR1',
'TRACK',
'ANY',
'N/A']),
('fits_ke ...
warnings.warn(errmsg, ValidationWarning)
2021-08-20 15:45:42,918 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2021-08-20 15:45:43,037 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 4, 3200, 2048) from mos_prism_nrs1_uncal.fits>,).
2021-08-20 15:45:43,039 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}
2021-08-20 15:45:43,058 - stpipe.Detector1Pipeline.refpix - INFO - Using refpix reference file: /grp/crds/cache/references/jwst/jwst_nirspec_refpix_0022.fits
2021-08-20 15:45:57,603 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2021-08-20 15:45:57,871 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 4, 3200, 2048) from mos_prism_nrs1_uncal.fits>,).
2021-08-20 15:45:57,873 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:45:57,893 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /grp/crds/cache/references/jwst/jwst_nirspec_linearity_0018.fits
2021-08-20 15:45:58,643 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2021-08-20 15:45:58,770 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 4, 3200, 2048) from mos_prism_nrs1_uncal.fits>,).
2021-08-20 15:45:58,772 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w', 'dark_output': None}
2021-08-20 15:45:58,832 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /grp/crds/cache/references/jwst/jwst_nirspec_dark_0086.fits
2021-08-20 15:46:04,022 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=4, nframes=1, groupgap=0
2021-08-20 15:46:04,024 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=65, nframes=1, groupgap=0
2021-08-20 15:46:04,820 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2021-08-20 15:46:05,570 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 4, 3200, 2048) from mos_prism_nrs1_uncal.fits>,).
2021-08-20 15:46:05,572 - stpipe.Detector1Pipeline.jump - INFO - Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0}
2021-08-20 15:46:05,618 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 4 sigma
2021-08-20 15:46:05,664 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0019.fits
2021-08-20 15:46:05,749 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits
2021-08-20 15:46:05,797 - stpipe.Detector1Pipeline.jump - INFO - Using 1 core for jump detection
2021-08-20 15:46:06,077 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2021-08-20 15:46:06,212 - stpipe.Detector1Pipeline.jump - INFO - Working on integration 1:
2021-08-20 15:46:07,952 - stpipe.Detector1Pipeline.jump - INFO - From highest outlier Two-point found 0 pixels with at least one CR and at least four groups
2021-08-20 15:46:07,953 - stpipe.Detector1Pipeline.jump - INFO - From highest outlier Two-point found 19712 pixels with at least one CR and three groups
2021-08-20 15:46:07,954 - stpipe.Detector1Pipeline.jump - INFO - From highest outlier Two-point found 8617 pixels with at least one CR and two groups
2021-08-20 15:46:08,652 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 2.57318 sec
2021-08-20 15:46:08,654 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 3.035781
2021-08-20 15:46:08,657 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2021-08-20 15:46:08,766 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 4, 3200, 2048) from mos_prism_nrs1_uncal.fits>,).
2021-08-20 15:46:08,768 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'}
2021-08-20 15:46:08,843 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits
2021-08-20 15:46:08,886 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0019.fits
2021-08-20 15:46:08,926 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = ols
2021-08-20 15:46:08,927 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/ramp_fitting/ols_fit.py:1169: RuntimeWarning: invalid value encountered in multiply
var_p4[num_int, :, :, :] *= (segs_4[num_int, :, :, :] > 0)
2021-08-20 15:46:22,534 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of groups per integration: 4
2021-08-20 15:46:22,535 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of integrations: 1
2021-08-20 15:46:22,742 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2021-08-20 15:46:22,879 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from mos_prism_nrs1_uncal.fits>,).
2021-08-20 15:46:22,881 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scale', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:46:22,940 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2021-08-20 15:46:22,941 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2021-08-20 15:46:22,943 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2021-08-20 15:46:23,033 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from mos_prism_nrs1_uncal.fits>,).
2021-08-20 15:46:23,035 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scaleints', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:46:23,091 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2021-08-20 15:46:23,092 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2021-08-20 15:46:23,095 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2021-08-20 15:46:23,096 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2021-08-20 15:46:23,098 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2021-08-20 15:46:23,107 - stpipe.AssignWcsStep - INFO - AssignWcsStep instance created.
2021-08-20 15:46:23,227 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep running with args (<ImageModel(2048, 2048) from mos_prism_nrs1_uncal.fits>,).
2021-08-20 15:46:23,229 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}
2021-08-20 15:46:23,374 - stpipe.AssignWcsStep - INFO - Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1
2021-08-20 15:46:23,409 - stpipe.AssignWcsStep - INFO - gwa_ytilt is 0.0332140289247036 deg
2021-08-20 15:46:23,410 - stpipe.AssignWcsStep - INFO - gwa_xtilt is 0.3367482721805573 deg
2021-08-20 15:46:23,411 - stpipe.AssignWcsStep - INFO - theta_y correction: -1.0907214098475986e-05 deg
2021-08-20 15:46:23,412 - stpipe.AssignWcsStep - INFO - theta_x correction: 0.0 deg
2021-08-20 15:46:23,640 - stpipe.AssignWcsStep - INFO - Slits projected on detector NRS1: [3, 4]
2021-08-20 15:46:23,641 - stpipe.AssignWcsStep - INFO - Computing WCS for 2 open slitlets
2021-08-20 15:46:23,669 - stpipe.AssignWcsStep - INFO - gwa_ytilt is 0.0332140289247036 deg
2021-08-20 15:46:23,669 - stpipe.AssignWcsStep - INFO - gwa_xtilt is 0.3367482721805573 deg
2021-08-20 15:46:23,670 - stpipe.AssignWcsStep - INFO - theta_y correction: -1.0907214098475986e-05 deg
2021-08-20 15:46:23,671 - stpipe.AssignWcsStep - INFO - theta_x correction: 0.0 deg
2021-08-20 15:46:23,680 - stpipe.AssignWcsStep - INFO - SPORDER= 0, wrange=[6e-07, 5.3e-06]
2021-08-20 15:46:23,796 - stpipe.AssignWcsStep - INFO - There are 0 open slits in quadrant 1
2021-08-20 15:46:23,797 - stpipe.AssignWcsStep - INFO - There are 0 open slits in quadrant 2
2021-08-20 15:46:23,798 - stpipe.AssignWcsStep - INFO - There are 1 open slits in quadrant 3
2021-08-20 15:46:23,808 - stpipe.AssignWcsStep - INFO - There are 1 open slits in quadrant 4
2021-08-20 15:46:23,818 - stpipe.AssignWcsStep - INFO - There are 0 open slits in quadrant 5
2021-08-20 15:46:23,945 - stpipe.AssignWcsStep - INFO - Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0034.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0028.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w/V0030006000104_msa.fits'}
2021-08-20 15:46:24,094 - stpipe.AssignWcsStep - INFO - COMPLETED assign_wcs
2021-08-20 15:46:24,102 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep done
2021-08-20 15:46:24,111 - stpipe.MSAFlagOpenStep - INFO - MSAFlagOpenStep instance created.
2021-08-20 15:46:24,224 - stpipe.MSAFlagOpenStep - INFO - Step MSAFlagOpenStep running with args (<ImageModel(2048, 2048) from mos_prism_nrs1_uncal.fits>,).
2021-08-20 15:46:24,226 - stpipe.MSAFlagOpenStep - INFO - Step MSAFlagOpenStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}
2021-08-20 15:46:24,245 - stpipe.MSAFlagOpenStep - INFO - Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json
2021-08-20 15:46:24,246 - stpipe.JwstStep - INFO - JwstStep instance created.
2021-08-20 15:46:24,371 - stpipe.MSAFlagOpenStep - INFO - gwa_ytilt is 0.0332140289247036 deg
2021-08-20 15:46:24,372 - stpipe.MSAFlagOpenStep - INFO - gwa_xtilt is 0.3367482721805573 deg
2021-08-20 15:46:24,373 - stpipe.MSAFlagOpenStep - INFO - theta_y correction: -1.0907214098475986e-05 deg
2021-08-20 15:46:24,374 - stpipe.MSAFlagOpenStep - INFO - theta_x correction: 0.0 deg
2021-08-20 15:46:24,384 - stpipe.MSAFlagOpenStep - INFO - SPORDER= 0, wrange=[6e-07, 5.3e-06]
2021-08-20 15:46:24,504 - stpipe.MSAFlagOpenStep - INFO - There are 5 open slits in quadrant 1
2021-08-20 15:46:24,548 - stpipe.MSAFlagOpenStep - INFO - There are 3 open slits in quadrant 2
2021-08-20 15:46:24,577 - stpipe.MSAFlagOpenStep - INFO - There are 9 open slits in quadrant 3
2021-08-20 15:46:24,655 - stpipe.MSAFlagOpenStep - INFO - There are 3 open slits in quadrant 4
2021-08-20 15:46:24,686 - stpipe.MSAFlagOpenStep - INFO - There are 0 open slits in quadrant 5
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/gwcs/geometry.py:203: RuntimeWarning: invalid value encountered in remainder
lon = np.mod(lon, 360.0 * u.deg if nquant else 360.0)
2021-08-20 15:46:35,909 - stpipe.MSAFlagOpenStep - INFO - Step MSAFlagOpenStep done
2021-08-20 15:46:35,919 - stpipe.Extract2dStep - INFO - Extract2dStep instance created.
2021-08-20 15:46:36,119 - stpipe.Extract2dStep - INFO - Step Extract2dStep running with args (<ImageModel(2048, 2048) from mos_prism_nrs1_uncal.fits>,).
2021-08-20 15:46:36,121 - stpipe.Extract2dStep - INFO - Step Extract2dStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}
2021-08-20 15:46:36,137 - stpipe.Extract2dStep - INFO - EXP_TYPE is NRS_MSASPEC
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/gwcs/utils.py:72: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
indx = np.asarray(np.floor(np.asarray(value) + 0.5), dtype=np.int)
2021-08-20 15:46:36,303 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 3
2021-08-20 15:46:36,304 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 1027 1464
2021-08-20 15:46:36,304 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1971 1983
2021-08-20 15:46:36,434 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:46:36,444 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.216281195 -45.702862740 156.216151591 -45.702738206 156.216089149 -45.702770462 156.216218751 -45.702894998
2021-08-20 15:46:36,445 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.216281195 -45.702862740 156.216151591 -45.702738206 156.216089149 -45.702770462 156.216218751 -45.702894998
2021-08-20 15:46:36,590 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 4
2021-08-20 15:46:36,591 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 1275 1699
2021-08-20 15:46:36,592 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 32 43
2021-08-20 15:46:36,713 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:46:36,722 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.168120618 -45.657220874 156.167995139 -45.657100409 156.167933468 -45.657132147 156.168058946 -45.657252613
2021-08-20 15:46:36,724 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.168120618 -45.657220874 156.167995139 -45.657100409 156.167933468 -45.657132147 156.168058946 -45.657252613
2021-08-20 15:46:36,795 - stpipe.Extract2dStep - INFO - Step Extract2dStep done
2021-08-20 15:46:37,010 - stpipe.SourceTypeStep - INFO - SourceTypeStep instance created.
2021-08-20 15:46:37,138 - stpipe.SourceTypeStep - INFO - Step SourceTypeStep running with args (<MultiSlitModel from mos_prism_nrs1_uncal.fits>,).
2021-08-20 15:46:37,140 - stpipe.SourceTypeStep - INFO - Step SourceTypeStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}
2021-08-20 15:46:37,148 - stpipe.SourceTypeStep - INFO - Input EXP_TYPE is NRS_MSASPEC
2021-08-20 15:46:37,149 - stpipe.SourceTypeStep - INFO - source_id=3, stellarity=100.0000, type=POINT
2021-08-20 15:46:37,150 - stpipe.SourceTypeStep - INFO - source_id=4, stellarity=100.0000, type=POINT
2021-08-20 15:46:37,152 - stpipe.SourceTypeStep - INFO - Step SourceTypeStep done
2021-08-20 15:46:37,165 - stpipe.WavecorrStep - INFO - WavecorrStep instance created.
2021-08-20 15:46:37,272 - stpipe.WavecorrStep - INFO - Step WavecorrStep running with args (<MultiSlitModel from mos_prism_nrs1_uncal.fits>,).
2021-08-20 15:46:37,274 - stpipe.WavecorrStep - INFO - Step WavecorrStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}
2021-08-20 15:46:37,295 - stpipe.WavecorrStep - INFO - Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf
2021-08-20 15:46:37,598 - stpipe.WavecorrStep - INFO - Detected a POINT source type in slit 3
2021-08-20 15:46:37,660 - stpipe.WavecorrStep - INFO - Using wavelength zero-point correction for aperture MOS
2021-08-20 15:46:37,664 - stpipe.WavecorrStep - INFO - Detected a POINT source type in slit 4
2021-08-20 15:46:37,723 - stpipe.WavecorrStep - INFO - Using wavelength zero-point correction for aperture MOS
2021-08-20 15:46:37,728 - stpipe.WavecorrStep - INFO - Step WavecorrStep done
2021-08-20 15:46:37,741 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created.
2021-08-20 15:46:37,860 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args (<MultiSlitModel from mos_prism_nrs1_uncal.fits>,).
2021-08-20 15:46:37,862 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}
2021-08-20 15:47:03,512 - stpipe.FlatFieldStep - INFO - Working on slit 3
2021-08-20 15:47:04,195 - stpipe.FlatFieldStep - INFO - Working on slit 4
2021-08-20 15:47:04,915 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done
2021-08-20 15:47:04,929 - stpipe.PathLossStep - INFO - PathLossStep instance created.
2021-08-20 15:47:05,261 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from mos_prism_nrs1_uncal.fits>,).
2021-08-20 15:47:05,263 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}
2021-08-20 15:47:05,284 - stpipe.PathLossStep - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits
2021-08-20 15:47:05,326 - stpipe.PathLossStep - INFO - Input exposure type is NRS_MSASPEC
2021-08-20 15:47:05,636 - stpipe.PathLossStep - INFO - Working on slit 0
2021-08-20 15:47:05,651 - stpipe.PathLossStep - INFO - Working on slit 1
2021-08-20 15:47:05,668 - stpipe.PathLossStep - INFO - Step PathLossStep done
2021-08-20 15:47:05,681 - stpipe.BarShadowStep - INFO - BarShadowStep instance created.
2021-08-20 15:47:05,797 - stpipe.BarShadowStep - INFO - Step BarShadowStep running with args (<MultiSlitModel from mos_prism_nrs1_uncal.fits>,).
2021-08-20 15:47:05,799 - stpipe.BarShadowStep - INFO - Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}
2021-08-20 15:47:05,821 - stpipe.BarShadowStep - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits
2021-08-20 15:47:06,177 - stpipe.BarShadowStep - INFO - Working on slitlet 3
2021-08-20 15:47:06,187 - stpipe.BarShadowStep - INFO - Bar shadow correction skipped for slitlet 3 (source not uniform)
2021-08-20 15:47:06,191 - stpipe.BarShadowStep - INFO - Working on slitlet 4
2021-08-20 15:47:06,201 - stpipe.BarShadowStep - INFO - Bar shadow correction skipped for slitlet 4 (source not uniform)
2021-08-20 15:47:06,207 - stpipe.BarShadowStep - INFO - Step BarShadowStep done
Looping over open slitlets...
Working with slitlet 3
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Test for this slit is skipped since source is POINT and hence, the correction is not applied.
Working with slitlet 4
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Test for this slit is skipped since source is POINT and hence, the correction is not applied.
* Test of barshadow_correction for slitlet 3 SKIPPED due to source=POINT.
Reported as PASSED since behavior is as expected.
* Test of percentage_greater_3threshold for slitlet 3 SKIPPED due to source=POINT.
Reported as PASSED since behavior is as expected.
* Test of percentage_greater_5threshold for slitlet 3 SKIPPED due to source=POINT.
Reported as PASSED since behavior is as expected.
* Test of barshadow_correction for slitlet 4 SKIPPED due to source=POINT.
Reported as PASSED since behavior is as expected.
* Test of percentage_greater_3threshold for slitlet 4 SKIPPED due to source=POINT.
Reported as PASSED since behavior is as expected.
* Test of percentage_greater_5threshold for slitlet 4 SKIPPED due to source=POINT.
Reported as PASSED since behavior is as expected.
*** Final result for barshadow test will be reported as PASSED ***
('* Barshadow validation test took ', '0.0003161430358886719 seconds to finish.')
Did barshadow validation test passed? True
Testing files for detector: nrs2
Working with uncal_file: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w/mos_prism_nrs2_uncal.fits
2021-08-20 15:47:07,031 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf
2021-08-20 15:47:07,048 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2021-08-20 15:47:07,050 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2021-08-20 15:47:07,052 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2021-08-20 15:47:07,053 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2021-08-20 15:47:07,055 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2021-08-20 15:47:07,056 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2021-08-20 15:47:07,058 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2021-08-20 15:47:07,059 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2021-08-20 15:47:07,060 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2021-08-20 15:47:07,062 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2021-08-20 15:47:07,063 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2021-08-20 15:47:07,065 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2021-08-20 15:47:07,066 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2021-08-20 15:47:07,068 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2021-08-20 15:47:07,070 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2021-08-20 15:47:07,071 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2021-08-20 15:47:07,073 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/stpipe/step.py:359: ResourceWarning: unclosed file <_io.FileIO name='/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w/mos_prism_nrs2_uncal.fits' mode='rb' closefd=True>
gc.collect()
2021-08-20 15:47:07,343 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w/mos_prism_nrs2_uncal.fits',).
2021-08-20 15:47:07,356 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}}}
2021-08-20 15:47:07,490 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'mos_prism_nrs2_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'persat', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias', 'trapdensity', 'trappars']
2021-08-20 15:47:07,501 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dark_0087.fits'.
2021-08-20 15:47:07,504 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_gain_0018.fits'.
2021-08-20 15:47:07,506 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_linearity_0021.fits'.
2021-08-20 15:47:07,509 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_mask_0011.fits'.
2021-08-20 15:47:07,510 - stpipe.Detector1Pipeline - INFO - Prefetch for PERSAT reference file is 'N/A'.
2021-08-20 15:47:07,511 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0017.fits'.
2021-08-20 15:47:07,514 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_refpix_0020.fits'.
2021-08-20 15:47:07,517 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2021-08-20 15:47:07,517 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2021-08-20 15:47:07,518 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_saturation_0021.fits'.
2021-08-20 15:47:07,521 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_superbias_0114.fits'.
2021-08-20 15:47:07,523 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPDENSITY reference file is 'N/A'.
2021-08-20 15:47:07,524 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPPARS reference file is 'N/A'.
2021-08-20 15:47:07,525 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2021-08-20 15:47:07,979 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 4, 3200, 2048) from mos_prism_nrs2_uncal.fits>,).
2021-08-20 15:47:07,982 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:47:08,090 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2021-08-20 15:47:08,092 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2021-08-20 15:47:08,094 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2021-08-20 15:47:08,350 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 4, 3200, 2048) from mos_prism_nrs2_uncal.fits>,).
2021-08-20 15:47:08,353 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:47:08,377 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /grp/crds/cache/references/jwst/jwst_nirspec_mask_0011.fits
2021-08-20 15:47:08,825 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2021-08-20 15:47:09,097 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 4, 3200, 2048) from mos_prism_nrs2_uncal.fits>,).
2021-08-20 15:47:09,099 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:47:09,122 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /grp/crds/cache/references/jwst/jwst_nirspec_saturation_0021.fits
2021-08-20 15:47:09,810 - stpipe.Detector1Pipeline.saturation - INFO - Detected 5379 saturated pixels
2021-08-20 15:47:09,840 - stpipe.Detector1Pipeline.saturation - INFO - Detected 0 A/D floor pixels
2021-08-20 15:47:09,867 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2021-08-20 15:47:10,153 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 4, 3200, 2048) from mos_prism_nrs2_uncal.fits>,).
2021-08-20 15:47:10,155 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:47:10,157 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2021-08-20 15:47:10,159 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc done
2021-08-20 15:47:10,412 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 4, 3200, 2048) from mos_prism_nrs2_uncal.fits>,).
2021-08-20 15:47:10,414 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:47:10,440 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /grp/crds/cache/references/jwst/jwst_nirspec_superbias_0114.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/stdatamodels/validate.py:34: ValidationWarning: While validating meta.exposure.readpatt the following error occurred:
'ALLIRS2' is not one of ['ACQ1', 'ACQ2', 'BRIGHT1', 'BRIGHT2', 'DEEP2', 'DEEP8', 'FAST', 'FASTGRPAVG', 'FASTGRPAVG8', 'FASTGRPAVG16', 'FASTGRPAVG32', 'FASTGRPAVG64', 'FASTR1', 'FASTR100', 'FGS', 'FGS60', 'FGS8370', 'FGS840', 'FGSRAPID', 'FINEGUIDE', 'ID', 'MEDIUM2', 'MEDIUM8', 'NIS', 'NISRAPID', 'NRS', 'NRSIRS2', 'NRSN16R4', 'NRSN32R8', 'NRSN8R2', 'NRSRAPID', 'NRSIRS2RAPID', 'NRSRAPIDD1', 'NRSRAPIDD2', 'NRSRAPIDD6', 'NRSSLOW', 'RAPID', 'SHALLOW2', 'SHALLOW4', 'SLOW', 'SLOWR1', 'TRACK', 'ANY', 'N/A']
Failed validating 'enum' in schema:
OrderedDict([('title', 'Readout pattern'),
('type', 'string'),
('enum',
['ACQ1',
'ACQ2',
'BRIGHT1',
'BRIGHT2',
'DEEP2',
'DEEP8',
'FAST',
'FASTGRPAVG',
'FASTGRPAVG8',
'FASTGRPAVG16',
'FASTGRPAVG32',
'FASTGRPAVG64',
'FASTR1',
'FASTR100',
'FGS',
'FGS60',
'FGS8370',
'FGS840',
'FGSRAPID',
'FINEGUIDE',
'ID',
'MEDIUM2',
'MEDIUM8',
'NIS',
'NISRAPID',
'NRS',
'NRSIRS2',
'NRSN16R4',
'NRSN32R8',
'NRSN8R2',
'NRSRAPID',
'NRSIRS2RAPID',
'NRSRAPIDD1',
'NRSRAPIDD2',
'NRSRAPIDD6',
'NRSSLOW',
'RAPID',
'SHALLOW2',
'SHALLOW4',
'SLOW',
'SLOWR1',
'TRACK',
'ANY',
'N/A']),
('fits_ke ...
warnings.warn(errmsg, ValidationWarning)
2021-08-20 15:47:10,930 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2021-08-20 15:47:11,222 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 4, 3200, 2048) from mos_prism_nrs2_uncal.fits>,).
2021-08-20 15:47:11,225 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}
2021-08-20 15:47:11,248 - stpipe.Detector1Pipeline.refpix - INFO - Using refpix reference file: /grp/crds/cache/references/jwst/jwst_nirspec_refpix_0020.fits
2021-08-20 15:47:27,621 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2021-08-20 15:47:27,957 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 4, 3200, 2048) from mos_prism_nrs2_uncal.fits>,).
2021-08-20 15:47:27,959 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:47:27,985 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /grp/crds/cache/references/jwst/jwst_nirspec_linearity_0021.fits
2021-08-20 15:47:28,718 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2021-08-20 15:47:28,872 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 4, 3200, 2048) from mos_prism_nrs2_uncal.fits>,).
2021-08-20 15:47:28,874 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w', 'dark_output': None}
2021-08-20 15:47:28,937 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /grp/crds/cache/references/jwst/jwst_nirspec_dark_0087.fits
2021-08-20 15:47:34,184 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=4, nframes=1, groupgap=0
2021-08-20 15:47:34,186 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=65, nframes=1, groupgap=0
2021-08-20 15:47:34,905 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2021-08-20 15:47:35,705 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 4, 3200, 2048) from mos_prism_nrs2_uncal.fits>,).
2021-08-20 15:47:35,708 - stpipe.Detector1Pipeline.jump - INFO - Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0}
2021-08-20 15:47:35,750 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 4 sigma
2021-08-20 15:47:35,783 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0018.fits
2021-08-20 15:47:35,882 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0017.fits
2021-08-20 15:47:35,933 - stpipe.Detector1Pipeline.jump - INFO - Using 1 core for jump detection
2021-08-20 15:47:36,178 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2021-08-20 15:47:36,312 - stpipe.Detector1Pipeline.jump - INFO - Working on integration 1:
2021-08-20 15:47:38,654 - stpipe.Detector1Pipeline.jump - INFO - From highest outlier Two-point found 0 pixels with at least one CR and at least four groups
2021-08-20 15:47:38,655 - stpipe.Detector1Pipeline.jump - INFO - From highest outlier Two-point found 7787 pixels with at least one CR and three groups
2021-08-20 15:47:38,655 - stpipe.Detector1Pipeline.jump - INFO - From highest outlier Two-point found 3636 pixels with at least one CR and two groups
2021-08-20 15:47:39,051 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 2.87128 sec
2021-08-20 15:47:39,054 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 3.304004
2021-08-20 15:47:39,057 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2021-08-20 15:47:39,191 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 4, 3200, 2048) from mos_prism_nrs2_uncal.fits>,).
2021-08-20 15:47:39,193 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'}
2021-08-20 15:47:39,267 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0017.fits
2021-08-20 15:47:39,314 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0018.fits
2021-08-20 15:47:39,355 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = ols
2021-08-20 15:47:39,356 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/ramp_fitting/ols_fit.py:1169: RuntimeWarning: invalid value encountered in multiply
var_p4[num_int, :, :, :] *= (segs_4[num_int, :, :, :] > 0)
2021-08-20 15:47:56,174 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of groups per integration: 4
2021-08-20 15:47:56,176 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of integrations: 1
2021-08-20 15:47:56,439 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2021-08-20 15:47:56,589 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from mos_prism_nrs2_uncal.fits>,).
2021-08-20 15:47:56,590 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scale', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:47:56,647 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2021-08-20 15:47:56,648 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2021-08-20 15:47:56,651 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2021-08-20 15:47:56,776 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from mos_prism_nrs2_uncal.fits>,).
2021-08-20 15:47:56,778 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scaleints', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:47:56,836 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2021-08-20 15:47:56,837 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2021-08-20 15:47:56,840 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2021-08-20 15:47:56,841 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2021-08-20 15:47:56,842 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2021-08-20 15:47:56,852 - stpipe.AssignWcsStep - INFO - AssignWcsStep instance created.
2021-08-20 15:47:56,979 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep running with args (<ImageModel(2048, 2048) from mos_prism_nrs2_uncal.fits>,).
2021-08-20 15:47:56,981 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}
2021-08-20 15:47:57,126 - stpipe.AssignWcsStep - INFO - Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1
2021-08-20 15:47:57,159 - stpipe.AssignWcsStep - INFO - gwa_ytilt is 0.0332140289247036 deg
2021-08-20 15:47:57,160 - stpipe.AssignWcsStep - INFO - gwa_xtilt is 0.3367482721805573 deg
2021-08-20 15:47:57,161 - stpipe.AssignWcsStep - INFO - theta_y correction: -1.0907214098475986e-05 deg
2021-08-20 15:47:57,163 - stpipe.AssignWcsStep - INFO - theta_x correction: 0.0 deg
2021-08-20 15:47:57,374 - stpipe.AssignWcsStep - INFO - Removing slit 3 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:47:57,448 - stpipe.AssignWcsStep - INFO - Removing slit 4 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:47:57,450 - stpipe.AssignWcsStep - INFO - Slits projected on detector NRS2: []
2021-08-20 15:47:57,451 - stpipe.AssignWcsStep - CRITICAL - No open slits fall on detector NRS2.
No open slits fall on detector nrs2 Did barshadow validation test passed? skipped Testing files for detector: nrs1 Working with uncal_file: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w/mos_g140m_line1_NRS1_uncal.fits
2021-08-20 15:47:58,246 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf
2021-08-20 15:47:58,263 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2021-08-20 15:47:58,265 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2021-08-20 15:47:58,267 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2021-08-20 15:47:58,269 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2021-08-20 15:47:58,270 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2021-08-20 15:47:58,272 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2021-08-20 15:47:58,274 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2021-08-20 15:47:58,275 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2021-08-20 15:47:58,276 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2021-08-20 15:47:58,278 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2021-08-20 15:47:58,280 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2021-08-20 15:47:58,284 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2021-08-20 15:47:58,286 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2021-08-20 15:47:58,288 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2021-08-20 15:47:58,290 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2021-08-20 15:47:58,292 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2021-08-20 15:47:58,293 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/stpipe/step.py:359: ResourceWarning: unclosed file <_io.FileIO name='/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w/mos_g140m_line1_NRS1_uncal.fits' mode='rb' closefd=True>
gc.collect()
2021-08-20 15:47:58,534 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w/mos_g140m_line1_NRS1_uncal.fits',).
2021-08-20 15:47:58,546 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}}}
2021-08-20 15:47:58,666 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'mos_g140m_line1_NRS1_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'persat', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias', 'trapdensity', 'trappars']
2021-08-20 15:47:58,677 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dark_0140.fits'.
2021-08-20 15:47:58,680 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_gain_0019.fits'.
2021-08-20 15:47:58,683 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_linearity_0019.fits'.
2021-08-20 15:47:58,685 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_mask_0024.fits'.
2021-08-20 15:47:58,687 - stpipe.Detector1Pipeline - INFO - Prefetch for PERSAT reference file is 'N/A'.
2021-08-20 15:47:58,688 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0019.fits'.
2021-08-20 15:47:58,691 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'.
2021-08-20 15:47:58,692 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2021-08-20 15:47:58,693 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2021-08-20 15:47:58,694 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_saturation_0023.fits'.
2021-08-20 15:47:58,697 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_superbias_0087.fits'.
2021-08-20 15:47:58,699 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPDENSITY reference file is 'N/A'.
2021-08-20 15:47:58,700 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPPARS reference file is 'N/A'.
2021-08-20 15:47:58,701 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2021-08-20 15:47:59,188 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2021-08-20 15:47:59,190 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:47:59,339 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2021-08-20 15:47:59,340 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2021-08-20 15:47:59,343 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2021-08-20 15:47:59,669 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2021-08-20 15:47:59,672 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:47:59,694 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /grp/crds/cache/references/jwst/jwst_nirspec_mask_0024.fits
2021-08-20 15:47:59,971 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2021-08-20 15:48:00,172 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2021-08-20 15:48:00,175 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:48:00,196 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /grp/crds/cache/references/jwst/jwst_nirspec_saturation_0023.fits
2021-08-20 15:48:00,698 - stpipe.Detector1Pipeline.saturation - INFO - Detected 58922 saturated pixels
2021-08-20 15:48:00,732 - stpipe.Detector1Pipeline.saturation - INFO - Detected 0 A/D floor pixels
2021-08-20 15:48:00,743 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2021-08-20 15:48:00,967 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2021-08-20 15:48:00,969 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:48:00,970 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2021-08-20 15:48:00,972 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc done
2021-08-20 15:48:01,164 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2021-08-20 15:48:01,166 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:48:01,189 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /grp/crds/cache/references/jwst/jwst_nirspec_superbias_0087.fits
2021-08-20 15:48:01,482 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2021-08-20 15:48:01,680 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2021-08-20 15:48:01,682 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}
2021-08-20 15:48:01,691 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True
2021-08-20 15:48:01,692 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True
2021-08-20 15:48:01,693 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11
2021-08-20 15:48:01,694 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.000000
2021-08-20 15:48:01,695 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = True
2021-08-20 15:48:06,494 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2021-08-20 15:48:06,681 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2021-08-20 15:48:06,683 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:48:06,703 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /grp/crds/cache/references/jwst/jwst_nirspec_linearity_0019.fits
2021-08-20 15:48:07,471 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2021-08-20 15:48:07,653 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2021-08-20 15:48:07,655 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w', 'dark_output': None}
2021-08-20 15:48:07,675 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /grp/crds/cache/references/jwst/jwst_nirspec_dark_0140.fits
2021-08-20 15:48:07,900 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=6, nframes=1, groupgap=0
2021-08-20 15:48:07,901 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=10, nframes=1, groupgap=0
2021-08-20 15:48:08,131 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2021-08-20 15:48:08,318 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2021-08-20 15:48:08,320 - stpipe.Detector1Pipeline.jump - INFO - Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0}
2021-08-20 15:48:08,328 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 4 sigma
2021-08-20 15:48:08,340 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0019.fits
2021-08-20 15:48:08,394 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0019.fits
2021-08-20 15:48:08,438 - stpipe.Detector1Pipeline.jump - INFO - Using 1 core for jump detection
2021-08-20 15:48:08,654 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2021-08-20 15:48:08,836 - stpipe.Detector1Pipeline.jump - INFO - Working on integration 1:
2021-08-20 15:48:11,078 - stpipe.Detector1Pipeline.jump - INFO - From highest outlier Two-point found 39308 pixels with at least one CR and at least four groups
2021-08-20 15:48:11,080 - stpipe.Detector1Pipeline.jump - INFO - From highest outlier Two-point found 3301 pixels with at least one CR and three groups
2021-08-20 15:48:11,080 - stpipe.Detector1Pipeline.jump - INFO - From highest outlier Two-point found 44253 pixels with at least one CR and two groups
2021-08-20 15:48:13,365 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 4.70973 sec
2021-08-20 15:48:13,368 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 5.039443
2021-08-20 15:48:13,371 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2021-08-20 15:48:13,562 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2021-08-20 15:48:13,564 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'}
2021-08-20 15:48:13,595 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0019.fits
2021-08-20 15:48:13,641 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0019.fits
2021-08-20 15:48:13,680 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = ols
2021-08-20 15:48:13,682 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/ramp_fitting/ols_fit.py:1169: RuntimeWarning: invalid value encountered in multiply
var_p4[num_int, :, :, :] *= (segs_4[num_int, :, :, :] > 0)
2021-08-20 15:48:41,425 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of groups per integration: 6
2021-08-20 15:48:41,427 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of integrations: 1
2021-08-20 15:48:41,615 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2021-08-20 15:48:41,807 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2021-08-20 15:48:41,809 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scale', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:48:41,877 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2021-08-20 15:48:41,878 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2021-08-20 15:48:41,880 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2021-08-20 15:48:42,060 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2021-08-20 15:48:42,062 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scaleints', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:48:42,123 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2021-08-20 15:48:42,124 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2021-08-20 15:48:42,127 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2021-08-20 15:48:42,128 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2021-08-20 15:48:42,129 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2021-08-20 15:48:42,139 - stpipe.AssignWcsStep - INFO - AssignWcsStep instance created.
2021-08-20 15:48:42,336 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep running with args (<ImageModel(2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2021-08-20 15:48:42,338 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}
2021-08-20 15:48:42,498 - stpipe.AssignWcsStep - INFO - Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1
2021-08-20 15:48:42,720 - stpipe.AssignWcsStep - INFO - gwa_ytilt is 0.1260581910610199 deg
2021-08-20 15:48:42,721 - stpipe.AssignWcsStep - INFO - gwa_xtilt is 0.3316612243652344 deg
2021-08-20 15:48:42,722 - stpipe.AssignWcsStep - INFO - theta_y correction: 0.0002496099796717191 deg
2021-08-20 15:48:42,724 - stpipe.AssignWcsStep - INFO - theta_x correction: 0.0 deg
2021-08-20 15:48:42,906 - stpipe.AssignWcsStep - INFO - Removing slit 6 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:42,919 - stpipe.AssignWcsStep - INFO - Removing slit 7 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:42,933 - stpipe.AssignWcsStep - INFO - Removing slit 8 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:42,946 - stpipe.AssignWcsStep - INFO - Removing slit 9 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:42,960 - stpipe.AssignWcsStep - INFO - Removing slit 10 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:42,974 - stpipe.AssignWcsStep - INFO - Removing slit 11 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:42,987 - stpipe.AssignWcsStep - INFO - Removing slit 14 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,000 - stpipe.AssignWcsStep - INFO - Removing slit 15 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,014 - stpipe.AssignWcsStep - INFO - Removing slit 16 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,027 - stpipe.AssignWcsStep - INFO - Removing slit 17 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,040 - stpipe.AssignWcsStep - INFO - Removing slit 18 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,054 - stpipe.AssignWcsStep - INFO - Removing slit 19 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,067 - stpipe.AssignWcsStep - INFO - Removing slit 21 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,080 - stpipe.AssignWcsStep - INFO - Removing slit 25 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,093 - stpipe.AssignWcsStep - INFO - Removing slit 26 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,106 - stpipe.AssignWcsStep - INFO - Removing slit 27 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,120 - stpipe.AssignWcsStep - INFO - Removing slit 29 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,133 - stpipe.AssignWcsStep - INFO - Removing slit 31 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,146 - stpipe.AssignWcsStep - INFO - Removing slit 32 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,159 - stpipe.AssignWcsStep - INFO - Removing slit 33 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,172 - stpipe.AssignWcsStep - INFO - Removing slit 35 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,187 - stpipe.AssignWcsStep - INFO - Removing slit 37 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,200 - stpipe.AssignWcsStep - INFO - Removing slit 38 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,213 - stpipe.AssignWcsStep - INFO - Removing slit 39 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,226 - stpipe.AssignWcsStep - INFO - Removing slit 41 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,263 - stpipe.AssignWcsStep - INFO - Removing slit 1 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,276 - stpipe.AssignWcsStep - INFO - Removing slit 2 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,290 - stpipe.AssignWcsStep - INFO - Removing slit 3 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,303 - stpipe.AssignWcsStep - INFO - Removing slit 4 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,316 - stpipe.AssignWcsStep - INFO - Removing slit 5 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,330 - stpipe.AssignWcsStep - INFO - Removing slit 12 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,342 - stpipe.AssignWcsStep - INFO - Removing slit 13 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,356 - stpipe.AssignWcsStep - INFO - Removing slit 20 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,369 - stpipe.AssignWcsStep - INFO - Removing slit 22 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,382 - stpipe.AssignWcsStep - INFO - Removing slit 23 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,396 - stpipe.AssignWcsStep - INFO - Removing slit 24 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,410 - stpipe.AssignWcsStep - INFO - Removing slit 28 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,423 - stpipe.AssignWcsStep - INFO - Removing slit 30 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,437 - stpipe.AssignWcsStep - INFO - Removing slit 34 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,450 - stpipe.AssignWcsStep - INFO - Removing slit 36 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,463 - stpipe.AssignWcsStep - INFO - Removing slit 40 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:48:43,757 - stpipe.AssignWcsStep - INFO - Slits projected on detector NRS1: [42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68]
2021-08-20 15:48:43,759 - stpipe.AssignWcsStep - INFO - Computing WCS for 27 open slitlets
2021-08-20 15:48:43,786 - stpipe.AssignWcsStep - INFO - gwa_ytilt is 0.1260581910610199 deg
2021-08-20 15:48:43,787 - stpipe.AssignWcsStep - INFO - gwa_xtilt is 0.3316612243652344 deg
2021-08-20 15:48:43,788 - stpipe.AssignWcsStep - INFO - theta_y correction: 0.0002496099796717191 deg
2021-08-20 15:48:43,789 - stpipe.AssignWcsStep - INFO - theta_x correction: 0.0 deg
2021-08-20 15:48:43,798 - stpipe.AssignWcsStep - INFO - SPORDER= -1, wrange=[9.7e-07, 1.89e-06]
2021-08-20 15:48:43,914 - stpipe.AssignWcsStep - INFO - There are 2 open slits in quadrant 1
2021-08-20 15:48:43,933 - stpipe.AssignWcsStep - INFO - There are 11 open slits in quadrant 2
2021-08-20 15:48:44,022 - stpipe.AssignWcsStep - INFO - There are 4 open slits in quadrant 3
2021-08-20 15:48:44,055 - stpipe.AssignWcsStep - INFO - There are 10 open slits in quadrant 4
2021-08-20 15:48:44,354 - stpipe.AssignWcsStep - INFO - There are 0 open slits in quadrant 5
2021-08-20 15:48:44,493 - stpipe.AssignWcsStep - INFO - Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0032.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0023.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': 'V8460001000101_msa.fits'}
2021-08-20 15:48:44,939 - stpipe.AssignWcsStep - INFO - COMPLETED assign_wcs
2021-08-20 15:48:44,947 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep done
2021-08-20 15:48:44,957 - stpipe.MSAFlagOpenStep - INFO - MSAFlagOpenStep instance created.
2021-08-20 15:48:45,188 - stpipe.MSAFlagOpenStep - INFO - Step MSAFlagOpenStep running with args (<ImageModel(2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2021-08-20 15:48:45,190 - stpipe.MSAFlagOpenStep - INFO - Step MSAFlagOpenStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}
2021-08-20 15:48:45,207 - stpipe.MSAFlagOpenStep - INFO - Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json
2021-08-20 15:48:45,209 - stpipe.JwstStep - INFO - JwstStep instance created.
2021-08-20 15:48:45,333 - stpipe.MSAFlagOpenStep - INFO - gwa_ytilt is 0.1260581910610199 deg
2021-08-20 15:48:45,334 - stpipe.MSAFlagOpenStep - INFO - gwa_xtilt is 0.3316612243652344 deg
2021-08-20 15:48:45,334 - stpipe.MSAFlagOpenStep - INFO - theta_y correction: 0.0002496099796717191 deg
2021-08-20 15:48:45,336 - stpipe.MSAFlagOpenStep - INFO - theta_x correction: 0.0 deg
2021-08-20 15:48:45,345 - stpipe.MSAFlagOpenStep - INFO - SPORDER= -1, wrange=[9.7e-07, 1.89e-06]
2021-08-20 15:48:45,463 - stpipe.MSAFlagOpenStep - INFO - There are 5 open slits in quadrant 1
2021-08-20 15:48:45,506 - stpipe.MSAFlagOpenStep - INFO - There are 3 open slits in quadrant 2
2021-08-20 15:48:45,533 - stpipe.MSAFlagOpenStep - INFO - There are 9 open slits in quadrant 3
2021-08-20 15:48:45,606 - stpipe.MSAFlagOpenStep - INFO - There are 3 open slits in quadrant 4
2021-08-20 15:48:45,631 - stpipe.MSAFlagOpenStep - INFO - There are 0 open slits in quadrant 5
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/gwcs/geometry.py:203: RuntimeWarning: invalid value encountered in remainder
lon = np.mod(lon, 360.0 * u.deg if nquant else 360.0)
2021-08-20 15:48:58,240 - stpipe.MSAFlagOpenStep - INFO - Step MSAFlagOpenStep done
2021-08-20 15:48:58,262 - stpipe.Extract2dStep - INFO - Extract2dStep instance created.
2021-08-20 15:48:58,616 - stpipe.Extract2dStep - INFO - Step Extract2dStep running with args (<ImageModel(2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2021-08-20 15:48:58,618 - stpipe.Extract2dStep - INFO - Step Extract2dStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}
2021-08-20 15:48:58,637 - stpipe.Extract2dStep - INFO - EXP_TYPE is NRS_MSASPEC
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/gwcs/utils.py:72: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
indx = np.asarray(np.floor(np.asarray(value) + 0.5), dtype=np.int)
2021-08-20 15:48:59,139 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 53
2021-08-20 15:48:59,140 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 1542 2048
2021-08-20 15:48:59,140 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1315 1329
2021-08-20 15:48:59,265 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:48:59,275 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.226123221 -45.673642180 156.225994086 -45.673519691 156.225931834 -45.673551545 156.226060967 -45.673674035
2021-08-20 15:48:59,276 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.226123221 -45.673642180 156.225994086 -45.673519691 156.225931834 -45.673551545 156.226060967 -45.673674035
2021-08-20 15:49:00,004 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 54
2021-08-20 15:49:00,005 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 1542 2048
2021-08-20 15:49:00,006 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1305 1319
2021-08-20 15:49:00,134 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:00,144 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.225872406 -45.673404272 156.225743296 -45.673281804 156.225681049 -45.673313656 156.225810156 -45.673436124
2021-08-20 15:49:00,145 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.225872406 -45.673404272 156.225743296 -45.673281804 156.225681049 -45.673313656 156.225810156 -45.673436124
2021-08-20 15:49:00,873 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 42
2021-08-20 15:49:00,874 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 2018 2048
2021-08-20 15:49:00,874 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 545 562
2021-08-20 15:49:00,995 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:01,006 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.223646010 -45.647128995 156.223518121 -45.647008321 156.223456024 -45.647039957 156.223583911 -45.647160632
2021-08-20 15:49:01,007 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.223646010 -45.647128995 156.223518121 -45.647008321 156.223456024 -45.647039957 156.223583911 -45.647160632
2021-08-20 15:49:01,751 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 43
2021-08-20 15:49:01,753 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 1970 2048
2021-08-20 15:49:01,753 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 414 430
2021-08-20 15:49:01,885 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:01,896 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.218966486 -45.644829601 156.218838959 -45.644709141 156.218776943 -45.644740759 156.218904467 -45.644861220
2021-08-20 15:49:01,897 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.218966486 -45.644829601 156.218838959 -45.644709141 156.218776943 -45.644740759 156.218904467 -45.644861220
2021-08-20 15:49:02,671 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 44
2021-08-20 15:49:02,673 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 1969 2048
2021-08-20 15:49:02,673 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 404 420
2021-08-20 15:49:02,798 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:02,808 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.218718991 -45.644595818 156.218591488 -45.644475376 156.218529475 -45.644506992 156.218656977 -45.644627436
2021-08-20 15:49:02,810 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.218718991 -45.644595818 156.218591488 -45.644475376 156.218529475 -45.644506992 156.218656977 -45.644627436
2021-08-20 15:49:03,293 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 45
2021-08-20 15:49:03,294 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 1908 2048
2021-08-20 15:49:03,295 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 530 546
2021-08-20 15:49:03,420 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:03,430 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.219673020 -45.648613077 156.219545303 -45.648492383 156.219483265 -45.648524021 156.219610979 -45.648644716
2021-08-20 15:49:03,431 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.219673020 -45.648613077 156.219545303 -45.648492383 156.219483265 -45.648524021 156.219610979 -45.648644716
2021-08-20 15:49:04,187 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 46
2021-08-20 15:49:04,188 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 1882 2048
2021-08-20 15:49:04,189 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 202 218
2021-08-20 15:49:04,314 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:04,325 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.211127421 -45.641279813 156.211000463 -45.641159678 156.210938572 -45.641191268 156.211065527 -45.641311404
2021-08-20 15:49:04,326 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.211127421 -45.641279813 156.211000463 -45.641159678 156.210938572 -45.641191268 156.211065527 -45.641311404
2021-08-20 15:49:05,107 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 47
2021-08-20 15:49:05,108 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 1815 2048
2021-08-20 15:49:05,109 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 566 581
2021-08-20 15:49:05,237 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:05,247 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.217456055 -45.651006881 156.217328370 -45.650886079 156.217266356 -45.650917729 156.217394038 -45.651038531
2021-08-20 15:49:05,249 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.217456055 -45.651006881 156.217328370 -45.650886079 156.217266356 -45.650917729 156.217394038 -45.651038531
2021-08-20 15:49:05,726 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 48
2021-08-20 15:49:05,727 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 1815 2048
2021-08-20 15:49:05,727 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 561 576
2021-08-20 15:49:05,855 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:05,866 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.217332149 -45.650889654 156.217204477 -45.650768862 156.217142464 -45.650800511 156.217270135 -45.650921304
2021-08-20 15:49:05,867 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.217332149 -45.650889654 156.217204477 -45.650768862 156.217142464 -45.650800511 156.217270135 -45.650921304
2021-08-20 15:49:06,658 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 49
2021-08-20 15:49:06,659 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 1791 2048
2021-08-20 15:49:06,659 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 631 646
2021-08-20 15:49:06,786 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:06,796 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.218210913 -45.652969013 156.218083107 -45.652848076 156.218021073 -45.652879740 156.218148877 -45.653000678
2021-08-20 15:49:06,797 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.218210913 -45.652969013 156.218083107 -45.652848076 156.218021073 -45.652879740 156.218148877 -45.653000678
2021-08-20 15:49:07,588 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 50
2021-08-20 15:49:07,589 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 1774 2048
2021-08-20 15:49:07,590 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 238 253
2021-08-20 15:49:07,716 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:07,726 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.208399869 -45.643929179 156.208272959 -45.643808942 156.208211096 -45.643840541 156.208338005 -45.643960778
2021-08-20 15:49:07,728 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.208399869 -45.643929179 156.208272959 -45.643808942 156.208211096 -45.643840541 156.208338005 -45.643960778
2021-08-20 15:49:08,196 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 51
2021-08-20 15:49:08,197 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 1759 2048
2021-08-20 15:49:08,198 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 430 445
2021-08-20 15:49:08,323 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:08,333 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.212403238 -45.648718689 156.212275928 -45.648598111 156.212213993 -45.648629742 156.212341301 -45.648750320
2021-08-20 15:49:08,335 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.212403238 -45.648718689 156.212275928 -45.648598111 156.212213993 -45.648629742 156.212341301 -45.648750320
2021-08-20 15:49:09,140 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 52
2021-08-20 15:49:09,142 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 1722 2048
2021-08-20 15:49:09,142 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 803 817
2021-08-20 15:49:09,269 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:09,279 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.219947139 -45.658234585 156.219819020 -45.658113276 156.219756938 -45.658144979 156.219885055 -45.658266289
2021-08-20 15:49:09,280 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.219947139 -45.658234585 156.219819020 -45.658113276 156.219756938 -45.658144979 156.219885055 -45.658266289
2021-08-20 15:49:09,751 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 55
2021-08-20 15:49:09,752 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 1022 2048
2021-08-20 15:49:09,753 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1415 1430
2021-08-20 15:49:10,218 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:10,229 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.211226719 -45.684941334 156.211098073 -45.684818233 156.211035880 -45.684850241 156.211164524 -45.684973343
2021-08-20 15:49:10,230 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.211226719 -45.684941334 156.211098073 -45.684818233 156.211035880 -45.684850241 156.211164524 -45.684973343
2021-08-20 15:49:10,708 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 65
2021-08-20 15:49:10,708 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 427 1893
2021-08-20 15:49:10,709 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1251 1273
2021-08-20 15:49:10,853 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:10,862 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.187669449 -45.691221095 156.187541886 -45.691097893 156.187479754 -45.691130071 156.187607315 -45.691253274
2021-08-20 15:49:10,863 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.187669449 -45.691221095 156.187541886 -45.691097893 156.187479754 -45.691130071 156.187607315 -45.691253274
2021-08-20 15:49:11,665 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 66
2021-08-20 15:49:11,666 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 426 1892
2021-08-20 15:49:11,667 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1452 1474
2021-08-20 15:49:11,810 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:11,819 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.192290190 -45.696194513 156.192162195 -45.696070854 156.192099979 -45.696103094 156.192227972 -45.696226755
2021-08-20 15:49:11,820 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.192290190 -45.696194513 156.192162195 -45.696070854 156.192099979 -45.696103094 156.192227972 -45.696226755
2021-08-20 15:49:12,293 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 68
2021-08-20 15:49:12,295 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 375 1842
2021-08-20 15:49:12,295 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1476 1499
2021-08-20 15:49:12,445 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:12,454 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.191192483 -45.697686513 156.191064493 -45.697562756 156.191002259 -45.697595026 156.191130247 -45.697718784
2021-08-20 15:49:12,455 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.191192483 -45.697686513 156.191064493 -45.697562756 156.191002259 -45.697595026 156.191130247 -45.697718784
2021-08-20 15:49:13,289 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 56
2021-08-20 15:49:13,291 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 872 2048
2021-08-20 15:49:13,291 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 768 783
2021-08-20 15:49:13,427 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:13,437 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.191122501 -45.671742959 156.190995485 -45.671621176 156.190933579 -45.671653049 156.191060593 -45.671774833
2021-08-20 15:49:13,438 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.191122501 -45.671742959 156.190995485 -45.671621176 156.190933579 -45.671653049 156.191060593 -45.671774833
2021-08-20 15:49:13,910 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 57
2021-08-20 15:49:13,912 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 805 2048
2021-08-20 15:49:13,912 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 354 370
2021-08-20 15:49:14,402 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:14,412 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.179343124 -45.662963603 156.179216994 -45.662842617 156.179155236 -45.662874401 156.179281365 -45.662995389
2021-08-20 15:49:14,414 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.179343124 -45.662963603 156.179216994 -45.662842617 156.179155236 -45.662874401 156.179281365 -45.662995389
2021-08-20 15:49:14,885 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 58
2021-08-20 15:49:14,886 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 731 2048
2021-08-20 15:49:14,886 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 258 274
2021-08-20 15:49:15,027 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:15,038 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.174716949 -45.661919476 156.174591057 -45.661798624 156.174529324 -45.661830406 156.174655215 -45.661951259
2021-08-20 15:49:15,039 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.174716949 -45.661919476 156.174591057 -45.661798624 156.174529324 -45.661830406 156.174655215 -45.661951259
2021-08-20 15:49:15,875 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 59
2021-08-20 15:49:15,876 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 658 2048
2021-08-20 15:49:15,877 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 71 88
2021-08-20 15:49:16,019 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:16,030 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.167987333 -45.658726530 156.167861814 -45.658605973 156.167800128 -45.658637729 156.167925645 -45.658758288
2021-08-20 15:49:16,031 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.167987333 -45.658726530 156.167861814 -45.658605973 156.167800128 -45.658637729 156.167925645 -45.658758288
2021-08-20 15:49:16,514 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 60
2021-08-20 15:49:16,515 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 641 2048
2021-08-20 15:49:16,516 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 681 699
2021-08-20 15:49:16,652 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:16,663 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.181507045 -45.673611447 156.181380443 -45.673489678 156.181318559 -45.673521602 156.181445158 -45.673643373
2021-08-20 15:49:16,664 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.181507045 -45.673611447 156.181380443 -45.673489678 156.181318559 -45.673521602 156.181445158 -45.673643373
2021-08-20 15:49:17,528 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 61
2021-08-20 15:49:17,529 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 620 2048
2021-08-20 15:49:17,530 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 822 840
2021-08-20 15:49:17,667 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:17,676 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.184095390 -45.677365774 156.183968526 -45.677243686 156.183906587 -45.677275659 156.184033450 -45.677397747
2021-08-20 15:49:17,677 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.184095390 -45.677365774 156.183968526 -45.677243686 156.183906587 -45.677275659 156.184033450 -45.677397747
2021-08-20 15:49:18,150 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 62
2021-08-20 15:49:18,151 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 570 2032
2021-08-20 15:49:18,152 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 510 528
2021-08-20 15:49:18,289 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:18,299 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.175200333 -45.670700849 156.175074128 -45.670579384 156.175012293 -45.670611285 156.175138497 -45.670732752
2021-08-20 15:49:18,300 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.175200333 -45.670700849 156.175074128 -45.670579384 156.175012293 -45.670611285 156.175138497 -45.670732752
2021-08-20 15:49:18,769 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 63
2021-08-20 15:49:18,770 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 454 1915
2021-08-20 15:49:18,771 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 181 200
2021-08-20 15:49:19,326 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:19,337 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.163846800 -45.664818400 156.163721256 -45.664697497 156.163659498 -45.664729348 156.163785040 -45.664850252
2021-08-20 15:49:19,339 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.163846800 -45.664818400 156.163721256 -45.664697497 156.163659498 -45.664729348 156.163785040 -45.664850252
2021-08-20 15:49:19,829 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 64
2021-08-20 15:49:19,831 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 454 1915
2021-08-20 15:49:19,832 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 176 195
2021-08-20 15:49:19,972 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:19,984 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.163724974 -45.664701077 156.163599439 -45.664580184 156.163537682 -45.664612033 156.163663216 -45.664732928
2021-08-20 15:49:19,985 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.163724974 -45.664701077 156.163599439 -45.664580184 156.163537682 -45.664612033 156.163663216 -45.664732928
2021-08-20 15:49:20,845 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 67
2021-08-20 15:49:20,847 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 328 1789
2021-08-20 15:49:20,848 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 130 150
2021-08-20 15:49:20,988 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:49:21,000 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.158533940 -45.665758025 156.158408563 -45.665637125 156.158346784 -45.665669007 156.158472159 -45.665789909
2021-08-20 15:49:21,001 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.158533940 -45.665758025 156.158408563 -45.665637125 156.158346784 -45.665669007 156.158472159 -45.665789909
2021-08-20 15:49:21,961 - stpipe.Extract2dStep - INFO - Step Extract2dStep done
2021-08-20 15:49:24,537 - stpipe.SourceTypeStep - INFO - SourceTypeStep instance created.
2021-08-20 15:49:25,006 - stpipe.SourceTypeStep - INFO - Step SourceTypeStep running with args (<MultiSlitModel from mos_g140m_line1_NRS1_uncal.fits>,).
2021-08-20 15:49:25,009 - stpipe.SourceTypeStep - INFO - Step SourceTypeStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}
2021-08-20 15:49:25,028 - stpipe.SourceTypeStep - INFO - Input EXP_TYPE is NRS_MSASPEC
2021-08-20 15:49:25,029 - stpipe.SourceTypeStep - INFO - source_id=53, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,031 - stpipe.SourceTypeStep - INFO - source_id=54, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,032 - stpipe.SourceTypeStep - INFO - source_id=42, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,034 - stpipe.SourceTypeStep - INFO - source_id=43, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,035 - stpipe.SourceTypeStep - INFO - source_id=44, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,036 - stpipe.SourceTypeStep - INFO - source_id=45, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,037 - stpipe.SourceTypeStep - INFO - source_id=46, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,039 - stpipe.SourceTypeStep - INFO - source_id=47, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,040 - stpipe.SourceTypeStep - INFO - source_id=48, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,041 - stpipe.SourceTypeStep - INFO - source_id=49, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,042 - stpipe.SourceTypeStep - INFO - source_id=50, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,044 - stpipe.SourceTypeStep - INFO - source_id=51, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,045 - stpipe.SourceTypeStep - INFO - source_id=52, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,046 - stpipe.SourceTypeStep - INFO - source_id=55, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,047 - stpipe.SourceTypeStep - INFO - source_id=65, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,048 - stpipe.SourceTypeStep - INFO - source_id=66, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,049 - stpipe.SourceTypeStep - INFO - source_id=68, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,050 - stpipe.SourceTypeStep - INFO - source_id=56, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,051 - stpipe.SourceTypeStep - INFO - source_id=57, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,052 - stpipe.SourceTypeStep - INFO - source_id=58, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,054 - stpipe.SourceTypeStep - INFO - source_id=59, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,055 - stpipe.SourceTypeStep - INFO - source_id=60, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,056 - stpipe.SourceTypeStep - INFO - source_id=61, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,057 - stpipe.SourceTypeStep - INFO - source_id=62, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,058 - stpipe.SourceTypeStep - INFO - source_id=63, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,059 - stpipe.SourceTypeStep - INFO - source_id=64, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,060 - stpipe.SourceTypeStep - INFO - source_id=67, stellarity=0.0000, type=EXTENDED
2021-08-20 15:49:25,062 - stpipe.SourceTypeStep - INFO - Step SourceTypeStep done
2021-08-20 15:49:25,139 - stpipe.WavecorrStep - INFO - WavecorrStep instance created.
2021-08-20 15:49:25,498 - stpipe.WavecorrStep - INFO - Step WavecorrStep running with args (<MultiSlitModel from mos_g140m_line1_NRS1_uncal.fits>,).
2021-08-20 15:49:25,500 - stpipe.WavecorrStep - INFO - Step WavecorrStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}
2021-08-20 15:49:25,565 - stpipe.WavecorrStep - INFO - Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf
2021-08-20 15:49:29,990 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 53
2021-08-20 15:49:29,991 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 54
2021-08-20 15:49:29,992 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 42
2021-08-20 15:49:29,993 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 43
2021-08-20 15:49:29,994 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 44
2021-08-20 15:49:29,995 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 45
2021-08-20 15:49:29,996 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 46
2021-08-20 15:49:29,997 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 47
2021-08-20 15:49:29,998 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 48
2021-08-20 15:49:30,001 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 49
2021-08-20 15:49:30,002 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 50
2021-08-20 15:49:30,003 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 51
2021-08-20 15:49:30,004 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 52
2021-08-20 15:49:30,005 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 55
2021-08-20 15:49:30,008 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 65
2021-08-20 15:49:30,009 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 66
2021-08-20 15:49:30,009 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 68
2021-08-20 15:49:30,010 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 56
2021-08-20 15:49:30,010 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 57
2021-08-20 15:49:30,011 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 58
2021-08-20 15:49:30,012 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 59
2021-08-20 15:49:30,012 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 60
2021-08-20 15:49:30,013 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 61
2021-08-20 15:49:30,013 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 62
2021-08-20 15:49:30,014 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 63
2021-08-20 15:49:30,014 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 64
2021-08-20 15:49:30,015 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 67
2021-08-20 15:49:30,019 - stpipe.WavecorrStep - INFO - Step WavecorrStep done
2021-08-20 15:49:30,077 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created.
2021-08-20 15:49:30,662 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args (<MultiSlitModel from mos_g140m_line1_NRS1_uncal.fits>,).
2021-08-20 15:49:30,666 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}
2021-08-20 15:49:55,813 - stpipe.FlatFieldStep - INFO - Working on slit 53
2021-08-20 15:49:56,529 - stpipe.FlatFieldStep - INFO - Working on slit 54
2021-08-20 15:49:57,294 - stpipe.FlatFieldStep - INFO - Working on slit 42
2021-08-20 15:49:57,425 - stpipe.FlatFieldStep - INFO - Working on slit 43
2021-08-20 15:49:57,618 - stpipe.FlatFieldStep - INFO - Working on slit 44
2021-08-20 15:49:57,812 - stpipe.FlatFieldStep - INFO - Working on slit 45
2021-08-20 15:49:58,087 - stpipe.FlatFieldStep - INFO - Working on slit 46
2021-08-20 15:49:58,430 - stpipe.FlatFieldStep - INFO - Working on slit 47
2021-08-20 15:49:58,827 - stpipe.FlatFieldStep - INFO - Working on slit 48
2021-08-20 15:49:59,227 - stpipe.FlatFieldStep - INFO - Working on slit 49
2021-08-20 15:49:59,671 - stpipe.FlatFieldStep - INFO - Working on slit 50
2021-08-20 15:50:00,138 - stpipe.FlatFieldStep - INFO - Working on slit 51
2021-08-20 15:50:00,602 - stpipe.FlatFieldStep - INFO - Working on slit 52
2021-08-20 15:50:01,110 - stpipe.FlatFieldStep - INFO - Working on slit 55
2021-08-20 15:50:02,546 - stpipe.FlatFieldStep - INFO - Working on slit 65
2021-08-20 15:50:05,101 - stpipe.FlatFieldStep - INFO - Working on slit 66
2021-08-20 15:50:07,181 - stpipe.FlatFieldStep - INFO - Working on slit 68
2021-08-20 15:50:09,281 - stpipe.FlatFieldStep - INFO - Working on slit 56
2021-08-20 15:50:10,949 - stpipe.FlatFieldStep - INFO - Working on slit 57
2021-08-20 15:50:12,738 - stpipe.FlatFieldStep - INFO - Working on slit 58
2021-08-20 15:50:14,611 - stpipe.FlatFieldStep - INFO - Working on slit 59
2021-08-20 15:50:16,567 - stpipe.FlatFieldStep - INFO - Working on slit 60
2021-08-20 15:50:18,608 - stpipe.FlatFieldStep - INFO - Working on slit 61
2021-08-20 15:50:20,520 - stpipe.FlatFieldStep - INFO - Working on slit 62
2021-08-20 15:50:22,434 - stpipe.FlatFieldStep - INFO - Working on slit 63
2021-08-20 15:50:24,445 - stpipe.FlatFieldStep - INFO - Working on slit 64
2021-08-20 15:50:26,548 - stpipe.FlatFieldStep - INFO - Working on slit 67
2021-08-20 15:50:29,560 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done
2021-08-20 15:50:29,631 - stpipe.PathLossStep - INFO - PathLossStep instance created.
2021-08-20 15:50:30,523 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from mos_g140m_line1_NRS1_uncal.fits>,).
2021-08-20 15:50:30,528 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}
2021-08-20 15:50:30,593 - stpipe.PathLossStep - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits
2021-08-20 15:50:30,645 - stpipe.PathLossStep - INFO - Input exposure type is NRS_MSASPEC
2021-08-20 15:50:35,344 - stpipe.PathLossStep - INFO - Working on slit 0
2021-08-20 15:50:35,361 - stpipe.PathLossStep - INFO - Working on slit 1
2021-08-20 15:50:35,377 - stpipe.PathLossStep - INFO - Working on slit 2
2021-08-20 15:50:35,392 - stpipe.PathLossStep - INFO - Working on slit 3
2021-08-20 15:50:35,409 - stpipe.PathLossStep - INFO - Working on slit 4
2021-08-20 15:50:35,425 - stpipe.PathLossStep - INFO - Working on slit 5
2021-08-20 15:50:35,440 - stpipe.PathLossStep - INFO - Working on slit 6
2021-08-20 15:50:35,456 - stpipe.PathLossStep - INFO - Working on slit 7
2021-08-20 15:50:35,473 - stpipe.PathLossStep - INFO - Working on slit 8
2021-08-20 15:50:35,488 - stpipe.PathLossStep - INFO - Working on slit 9
2021-08-20 15:50:35,504 - stpipe.PathLossStep - INFO - Working on slit 10
2021-08-20 15:50:35,520 - stpipe.PathLossStep - INFO - Working on slit 11
2021-08-20 15:50:35,538 - stpipe.PathLossStep - INFO - Working on slit 12
2021-08-20 15:50:35,553 - stpipe.PathLossStep - INFO - Working on slit 13
2021-08-20 15:50:35,570 - stpipe.PathLossStep - INFO - Working on slit 14
2021-08-20 15:50:35,589 - stpipe.PathLossStep - INFO - Working on slit 15
2021-08-20 15:50:35,608 - stpipe.PathLossStep - INFO - Working on slit 16
2021-08-20 15:50:35,625 - stpipe.PathLossStep - INFO - Working on slit 17
2021-08-20 15:50:35,648 - stpipe.PathLossStep - INFO - Working on slit 18
2021-08-20 15:50:35,670 - stpipe.PathLossStep - INFO - Working on slit 19
2021-08-20 15:50:35,689 - stpipe.PathLossStep - INFO - Working on slit 20
2021-08-20 15:50:35,706 - stpipe.PathLossStep - INFO - Working on slit 21
2021-08-20 15:50:35,723 - stpipe.PathLossStep - INFO - Working on slit 22
2021-08-20 15:50:35,740 - stpipe.PathLossStep - INFO - Working on slit 23
2021-08-20 15:50:35,758 - stpipe.PathLossStep - INFO - Working on slit 24
2021-08-20 15:50:35,775 - stpipe.PathLossStep - INFO - Working on slit 25
2021-08-20 15:50:35,792 - stpipe.PathLossStep - INFO - Working on slit 26
2021-08-20 15:50:35,811 - stpipe.PathLossStep - INFO - Step PathLossStep done
2021-08-20 15:50:35,867 - stpipe.BarShadowStep - INFO - BarShadowStep instance created.
2021-08-20 15:50:36,391 - stpipe.BarShadowStep - INFO - Step BarShadowStep running with args (<MultiSlitModel from mos_g140m_line1_NRS1_uncal.fits>,).
2021-08-20 15:50:36,393 - stpipe.BarShadowStep - INFO - Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}
2021-08-20 15:50:36,466 - stpipe.BarShadowStep - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits
2021-08-20 15:50:40,808 - stpipe.BarShadowStep - INFO - Working on slitlet 53
2021-08-20 15:50:40,858 - stpipe.BarShadowStep - INFO - Working on slitlet 54
2021-08-20 15:50:40,905 - stpipe.BarShadowStep - INFO - Working on slitlet 42
2021-08-20 15:50:41,593 - stpipe.BarShadowStep - INFO - Working on slitlet 43
2021-08-20 15:50:41,619 - stpipe.BarShadowStep - INFO - Working on slitlet 44
2021-08-20 15:50:41,644 - stpipe.BarShadowStep - INFO - Working on slitlet 45
2021-08-20 15:50:41,674 - stpipe.BarShadowStep - INFO - Working on slitlet 46
2021-08-20 15:50:41,706 - stpipe.BarShadowStep - INFO - Working on slitlet 47
2021-08-20 15:50:41,739 - stpipe.BarShadowStep - INFO - Working on slitlet 48
2021-08-20 15:50:41,774 - stpipe.BarShadowStep - INFO - Working on slitlet 49
2021-08-20 15:50:41,809 - stpipe.BarShadowStep - INFO - Working on slitlet 50
2021-08-20 15:50:41,844 - stpipe.BarShadowStep - INFO - Working on slitlet 51
2021-08-20 15:50:41,886 - stpipe.BarShadowStep - INFO - Working on slitlet 52
2021-08-20 15:50:41,924 - stpipe.BarShadowStep - INFO - Working on slitlet 55
2021-08-20 15:50:42,001 - stpipe.BarShadowStep - INFO - Working on slitlet 65
2021-08-20 15:50:42,133 - stpipe.BarShadowStep - INFO - Working on slitlet 66
2021-08-20 15:50:42,255 - stpipe.BarShadowStep - INFO - Working on slitlet 68
2021-08-20 15:50:42,381 - stpipe.BarShadowStep - INFO - Working on slitlet 56
2021-08-20 15:50:42,476 - stpipe.BarShadowStep - INFO - Working on slitlet 57
2021-08-20 15:50:42,570 - stpipe.BarShadowStep - INFO - Working on slitlet 58
2021-08-20 15:50:42,672 - stpipe.BarShadowStep - INFO - Working on slitlet 59
2021-08-20 15:50:42,782 - stpipe.BarShadowStep - INFO - Working on slitlet 60
2021-08-20 15:50:42,889 - stpipe.BarShadowStep - INFO - Working on slitlet 61
2021-08-20 15:50:42,997 - stpipe.BarShadowStep - INFO - Working on slitlet 62
2021-08-20 15:50:43,109 - stpipe.BarShadowStep - INFO - Working on slitlet 63
2021-08-20 15:50:43,222 - stpipe.BarShadowStep - INFO - Working on slitlet 64
2021-08-20 15:50:43,333 - stpipe.BarShadowStep - INFO - Working on slitlet 67
2021-08-20 15:50:43,456 - stpipe.BarShadowStep - INFO - Step BarShadowStep done
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice.
return _methods._mean(a, axis=axis, dtype=dtype,
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide
ret = um.true_divide(
Looping over open slitlets... Working with slitlet 53 Slitlet name in fits file previous to barshadow and in barshadow output file are the same. Calculating barshadow correction... Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits Calculation of barshadow correction done. nan nan Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.195e-03 median = -3.540e-05 stdev = 6.063e-03
Maximum Relativebarshadow_correction = 5.761e-04
Minimum Relativebarshadow_correction = -2.816e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 13%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
*** WARNING: More than 10% of pixels have a median value greater than 5xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 53? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: FAILED
Working with slitlet 54
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. nan nan Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.141e-03 median = -4.434e-05 stdev = 5.973e-03
Maximum Relativebarshadow_correction = 4.518e-04
Minimum Relativebarshadow_correction = -2.811e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 18%
-> 5xtheshold = 12%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
*** WARNING: More than 10% of pixels have a median value greater than 5xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 54? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: FAILED
Working with slitlet 42
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. nan nan Creating final barshadow test plot...
Relative barshadow_correction : mean = -1.941e-03 median = -4.132e-06 stdev = 3.797e-03
Maximum Relativebarshadow_correction = 1.723e-04
Minimum Relativebarshadow_correction = -9.762e-03
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 20%
-> 3xtheshold = 20%
-> 5xtheshold = 0%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 42? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 43
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. nan nan Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.452e-03 median = -1.345e-04 stdev = 4.581e-03
Maximum Relativebarshadow_correction = 2.783e-05
Minimum Relativebarshadow_correction = -1.190e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 20%
-> 3xtheshold = 20%
-> 5xtheshold = 0%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 43? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 44
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. nan nan Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.153e-03 median = -1.298e-05 stdev = 4.213e-03
Maximum Relativebarshadow_correction = 3.550e-04
Minimum Relativebarshadow_correction = -1.099e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 20%
-> 3xtheshold = 20%
-> 5xtheshold = 0%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 44? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 45
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. nan nan Creating final barshadow test plot...
Relative barshadow_correction : mean = -4.093e-03 median = -2.808e-05 stdev = 6.837e-03
Maximum Relativebarshadow_correction = 2.014e-04
Minimum Relativebarshadow_correction = -2.027e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 34%
-> 3xtheshold = 20%
-> 5xtheshold = 20%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
*** WARNING: More than 10% of pixels have a median value greater than 5xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 45? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: FAILED
Working with slitlet 46
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. nan nan Creating final barshadow test plot...
Relative barshadow_correction : mean = -4.412e-03 median = -4.677e-05 stdev = 7.847e-03
Maximum Relativebarshadow_correction = 8.356e-04
Minimum Relativebarshadow_correction = -2.599e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 17%
-> 5xtheshold = 17%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
*** WARNING: More than 10% of pixels have a median value greater than 5xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 46? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: FAILED
Working with slitlet 47
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. nan nan Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.541e-03 median = -3.473e-05 stdev = 4.773e-03
Maximum Relativebarshadow_correction = 3.042e-04
Minimum Relativebarshadow_correction = -1.535e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 20%
-> 3xtheshold = 20%
-> 5xtheshold = 6%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 47? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 48
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. nan nan Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.390e-03 median = -3.040e-05 stdev = 4.545e-03
Maximum Relativebarshadow_correction = 3.286e-04
Minimum Relativebarshadow_correction = -1.392e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 20%
-> 3xtheshold = 20%
-> 5xtheshold = 4%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 48? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 49
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. nan nan Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.906e-03 median = -7.570e-05 stdev = 6.372e-03
Maximum Relativebarshadow_correction = 4.926e-04
Minimum Relativebarshadow_correction = -2.797e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 14%
-> 5xtheshold = 5%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 49? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 50
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. nan nan Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.709e-03 median = -5.759e-05 stdev = 6.547e-03
Maximum Relativebarshadow_correction = 4.152e-04
Minimum Relativebarshadow_correction = -2.450e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 27%
-> 3xtheshold = 19%
-> 5xtheshold = 19%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
*** WARNING: More than 10% of pixels have a median value greater than 5xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 50? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: FAILED
Working with slitlet 51
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. nan nan Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.173e-03 median = -4.135e-05 stdev = 5.743e-03
Maximum Relativebarshadow_correction = 3.422e-04
Minimum Relativebarshadow_correction = -2.122e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 20%
-> 5xtheshold = 12%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
*** WARNING: More than 10% of pixels have a median value greater than 5xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 51? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: FAILED
Working with slitlet 52
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits Calculation of barshadow correction done. nan nan Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.786e-03 median = -2.736e-05 stdev = 5.242e-03
Maximum Relativebarshadow_correction = 3.349e-04
Minimum Relativebarshadow_correction = -2.091e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 22%
-> 3xtheshold = 20%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 52? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 55
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. nan nan Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.847e-03 median = -4.987e-05 stdev = 5.629e-03
Maximum Relativebarshadow_correction = 8.210e-04
Minimum Relativebarshadow_correction = -2.875e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 19%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 55? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 65
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. nan nan Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.953e-03 median = -6.132e-05 stdev = 5.815e-03
Maximum Relativebarshadow_correction = 1.896e-03
Minimum Relativebarshadow_correction = -2.933e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 18%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 65? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 66
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.909e-03 median = -6.152e-05 stdev = 5.698e-03
Maximum Relativebarshadow_correction = 1.364e-03
Minimum Relativebarshadow_correction = -2.912e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 18%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 66? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 68
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.023e-03 median = -6.120e-05 stdev = 5.911e-03
Maximum Relativebarshadow_correction = 1.874e-03
Minimum Relativebarshadow_correction = -2.874e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 68? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 56
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. nan nan Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.762e-03 median = -5.814e-05 stdev = 5.465e-03
Maximum Relativebarshadow_correction = 8.661e-04
Minimum Relativebarshadow_correction = -2.912e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 19%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 56? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 57
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. nan nan Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.117e-03 median = -5.980e-05 stdev = 6.014e-03
Maximum Relativebarshadow_correction = 9.866e-04
Minimum Relativebarshadow_correction = -2.872e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 26%
-> 3xtheshold = 18%
-> 5xtheshold = 10%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 57? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 58
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.065e-03 median = -4.995e-05 stdev = 5.904e-03
Maximum Relativebarshadow_correction = 7.673e-04
Minimum Relativebarshadow_correction = -2.949e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 11%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
*** WARNING: More than 10% of pixels have a median value greater than 5xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 58? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: FAILED
Working with slitlet 59
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.917e-03 median = -5.683e-05 stdev = 5.668e-03
Maximum Relativebarshadow_correction = 7.876e-04
Minimum Relativebarshadow_correction = -2.899e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 18%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 59? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 60
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.055e-03 median = -6.258e-05 stdev = 5.881e-03
Maximum Relativebarshadow_correction = 1.090e-03
Minimum Relativebarshadow_correction = -2.874e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 10%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 60? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 61
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.889e-03 median = -5.227e-05 stdev = 5.674e-03
Maximum Relativebarshadow_correction = 1.279e-03
Minimum Relativebarshadow_correction = -2.899e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 19%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 61? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 62
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.812e-03 median = -5.423e-05 stdev = 5.611e-03
Maximum Relativebarshadow_correction = 1.796e-03
Minimum Relativebarshadow_correction = -2.871e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 18%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 62? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 63
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.045e-03 median = -6.162e-05 stdev = 5.899e-03
Maximum Relativebarshadow_correction = 1.109e-03
Minimum Relativebarshadow_correction = -2.880e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 10%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 63? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 64
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.029e-03 median = -5.944e-05 stdev = 5.870e-03
Maximum Relativebarshadow_correction = 1.419e-03
Minimum Relativebarshadow_correction = -2.871e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 10%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 64? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 67
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.006e-03 median = -5.915e-05 stdev = 5.856e-03
Maximum Relativebarshadow_correction = 1.246e-03
Minimum Relativebarshadow_correction = -2.849e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 67? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
* Test of barshadow_correction for slitlet 53 PASSED.
* Test of barshadow_correction for slitlet 54 PASSED.
* Test of barshadow_correction for slitlet 42 PASSED.
* Test of barshadow_correction for slitlet 43 PASSED.
* Test of barshadow_correction for slitlet 44 PASSED.
* Test of barshadow_correction for slitlet 45 PASSED.
* Test of barshadow_correction for slitlet 46 PASSED.
* Test of barshadow_correction for slitlet 47 PASSED.
* Test of barshadow_correction for slitlet 48 PASSED.
* Test of barshadow_correction for slitlet 49 PASSED.
* Test of barshadow_correction for slitlet 50 PASSED.
* Test of barshadow_correction for slitlet 51 PASSED.
* Test of barshadow_correction for slitlet 52 PASSED.
* Test of barshadow_correction for slitlet 55 PASSED.
* Test of barshadow_correction for slitlet 65 PASSED.
* Test of barshadow_correction for slitlet 66 PASSED.
* Test of barshadow_correction for slitlet 68 PASSED.
* Test of barshadow_correction for slitlet 56 PASSED.
* Test of barshadow_correction for slitlet 57 PASSED.
* Test of barshadow_correction for slitlet 58 PASSED.
* Test of barshadow_correction for slitlet 59 PASSED.
* Test of barshadow_correction for slitlet 60 PASSED.
* Test of barshadow_correction for slitlet 61 PASSED.
* Test of barshadow_correction for slitlet 62 PASSED.
* Test of barshadow_correction for slitlet 63 PASSED.
* Test of barshadow_correction for slitlet 64 PASSED.
* Test of barshadow_correction for slitlet 67 PASSED.
*** Final result for barshadow test will be reported as PASSED ***
('* Barshadow validation test took ', '59.92663860321045 seconds to finish.')
Did barshadow validation test passed? True
Testing files for detector: nrs2
Working with uncal_file: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w/mos_g140m_line1_NRS2_uncal.fits
2021-08-20 15:51:44,186 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf
2021-08-20 15:51:44,201 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2021-08-20 15:51:44,203 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2021-08-20 15:51:44,204 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2021-08-20 15:51:44,206 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2021-08-20 15:51:44,207 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2021-08-20 15:51:44,209 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2021-08-20 15:51:44,210 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2021-08-20 15:51:44,212 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2021-08-20 15:51:44,213 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2021-08-20 15:51:44,215 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2021-08-20 15:51:44,216 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2021-08-20 15:51:44,218 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2021-08-20 15:51:44,219 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2021-08-20 15:51:44,221 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2021-08-20 15:51:44,222 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2021-08-20 15:51:44,224 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2021-08-20 15:51:44,226 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/stpipe/step.py:359: ResourceWarning: unclosed file <_io.FileIO name='/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w/mos_g140m_line1_NRS2_uncal.fits' mode='rb' closefd=True>
gc.collect()
2021-08-20 15:51:44,857 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w/mos_g140m_line1_NRS2_uncal.fits',).
2021-08-20 15:51:44,868 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}}}
2021-08-20 15:51:44,989 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'mos_g140m_line1_NRS2_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'persat', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias', 'trapdensity', 'trappars']
2021-08-20 15:51:44,997 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dark_0143.fits'.
2021-08-20 15:51:45,000 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_gain_0018.fits'.
2021-08-20 15:51:45,002 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_linearity_0020.fits'.
2021-08-20 15:51:45,005 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_mask_0025.fits'.
2021-08-20 15:51:45,007 - stpipe.Detector1Pipeline - INFO - Prefetch for PERSAT reference file is 'N/A'.
2021-08-20 15:51:45,008 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0016.fits'.
2021-08-20 15:51:45,010 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'.
2021-08-20 15:51:45,011 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2021-08-20 15:51:45,012 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2021-08-20 15:51:45,013 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_saturation_0022.fits'.
2021-08-20 15:51:45,015 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_superbias_0104.fits'.
2021-08-20 15:51:45,017 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPDENSITY reference file is 'N/A'.
2021-08-20 15:51:45,018 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPPARS reference file is 'N/A'.
2021-08-20 15:51:45,019 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2021-08-20 15:51:45,766 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2021-08-20 15:51:45,768 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:51:45,918 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2021-08-20 15:51:45,920 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2021-08-20 15:51:45,921 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2021-08-20 15:51:46,467 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2021-08-20 15:51:46,469 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:51:46,491 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /grp/crds/cache/references/jwst/jwst_nirspec_mask_0025.fits
2021-08-20 15:51:46,773 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2021-08-20 15:51:47,314 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2021-08-20 15:51:47,316 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:51:47,336 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /grp/crds/cache/references/jwst/jwst_nirspec_saturation_0022.fits
2021-08-20 15:51:47,775 - stpipe.Detector1Pipeline.saturation - INFO - Detected 83201 saturated pixels
2021-08-20 15:51:47,800 - stpipe.Detector1Pipeline.saturation - INFO - Detected 0 A/D floor pixels
2021-08-20 15:51:47,809 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2021-08-20 15:51:48,346 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2021-08-20 15:51:48,348 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:51:48,349 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2021-08-20 15:51:48,351 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc done
2021-08-20 15:51:48,918 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2021-08-20 15:51:48,921 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:51:48,943 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /grp/crds/cache/references/jwst/jwst_nirspec_superbias_0104.fits
2021-08-20 15:51:49,238 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2021-08-20 15:51:49,775 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2021-08-20 15:51:49,778 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}
2021-08-20 15:51:49,788 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True
2021-08-20 15:51:49,789 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True
2021-08-20 15:51:49,790 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11
2021-08-20 15:51:49,791 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.000000
2021-08-20 15:51:49,792 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = True
2021-08-20 15:51:53,497 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2021-08-20 15:51:54,038 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2021-08-20 15:51:54,040 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:51:54,062 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /grp/crds/cache/references/jwst/jwst_nirspec_linearity_0020.fits
2021-08-20 15:51:54,828 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2021-08-20 15:51:55,364 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2021-08-20 15:51:55,366 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w', 'dark_output': None}
2021-08-20 15:51:55,387 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /grp/crds/cache/references/jwst/jwst_nirspec_dark_0143.fits
2021-08-20 15:51:55,599 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=6, nframes=1, groupgap=0
2021-08-20 15:51:55,600 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=10, nframes=1, groupgap=0
2021-08-20 15:51:55,773 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2021-08-20 15:51:56,328 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2021-08-20 15:51:56,330 - stpipe.Detector1Pipeline.jump - INFO - Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0}
2021-08-20 15:51:56,339 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 4 sigma
2021-08-20 15:51:56,353 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0018.fits
2021-08-20 15:51:56,408 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0016.fits
2021-08-20 15:51:56,450 - stpipe.Detector1Pipeline.jump - INFO - Using 1 core for jump detection
2021-08-20 15:51:56,630 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2021-08-20 15:51:56,808 - stpipe.Detector1Pipeline.jump - INFO - Working on integration 1:
2021-08-20 15:51:59,574 - stpipe.Detector1Pipeline.jump - INFO - From highest outlier Two-point found 39124 pixels with at least one CR and at least four groups
2021-08-20 15:51:59,575 - stpipe.Detector1Pipeline.jump - INFO - From highest outlier Two-point found 2731 pixels with at least one CR and three groups
2021-08-20 15:51:59,576 - stpipe.Detector1Pipeline.jump - INFO - From highest outlier Two-point found 48084 pixels with at least one CR and two groups
2021-08-20 15:52:02,835 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 6.20367 sec
2021-08-20 15:52:02,838 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 6.498417
2021-08-20 15:52:02,841 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2021-08-20 15:52:03,382 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2021-08-20 15:52:03,384 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'}
2021-08-20 15:52:03,416 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0016.fits
2021-08-20 15:52:03,481 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0018.fits
2021-08-20 15:52:03,523 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = ols
2021-08-20 15:52:03,525 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/ramp_fitting/ols_fit.py:1169: RuntimeWarning: invalid value encountered in multiply
var_p4[num_int, :, :, :] *= (segs_4[num_int, :, :, :] > 0)
2021-08-20 15:52:34,944 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of groups per integration: 6
2021-08-20 15:52:34,945 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of integrations: 1
2021-08-20 15:52:35,207 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2021-08-20 15:52:35,808 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2021-08-20 15:52:35,811 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scale', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:52:35,871 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2021-08-20 15:52:35,872 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2021-08-20 15:52:35,875 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2021-08-20 15:52:36,419 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2021-08-20 15:52:36,421 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scaleints', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpckcu6a_w'}
2021-08-20 15:52:36,482 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2021-08-20 15:52:36,483 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2021-08-20 15:52:36,486 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2021-08-20 15:52:36,488 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2021-08-20 15:52:36,489 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2021-08-20 15:52:36,499 - stpipe.AssignWcsStep - INFO - AssignWcsStep instance created.
2021-08-20 15:52:37,640 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep running with args (<ImageModel(2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2021-08-20 15:52:37,642 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}
2021-08-20 15:52:37,819 - stpipe.AssignWcsStep - INFO - Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1
2021-08-20 15:52:38,060 - stpipe.AssignWcsStep - INFO - gwa_ytilt is 0.1260581910610199 deg
2021-08-20 15:52:38,061 - stpipe.AssignWcsStep - INFO - gwa_xtilt is 0.3316612243652344 deg
2021-08-20 15:52:38,062 - stpipe.AssignWcsStep - INFO - theta_y correction: 0.0002496099796717191 deg
2021-08-20 15:52:38,063 - stpipe.AssignWcsStep - INFO - theta_x correction: 0.0 deg
2021-08-20 15:52:38,935 - stpipe.AssignWcsStep - INFO - Removing slit 65 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:52:38,952 - stpipe.AssignWcsStep - INFO - Removing slit 66 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:52:38,965 - stpipe.AssignWcsStep - INFO - Removing slit 68 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:52:39,002 - stpipe.AssignWcsStep - INFO - Removing slit 58 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:52:39,016 - stpipe.AssignWcsStep - INFO - Removing slit 59 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:52:39,030 - stpipe.AssignWcsStep - INFO - Removing slit 60 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:52:39,043 - stpipe.AssignWcsStep - INFO - Removing slit 61 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:52:39,057 - stpipe.AssignWcsStep - INFO - Removing slit 62 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:52:39,070 - stpipe.AssignWcsStep - INFO - Removing slit 63 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:52:39,084 - stpipe.AssignWcsStep - INFO - Removing slit 64 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:52:39,097 - stpipe.AssignWcsStep - INFO - Removing slit 67 from the list of open slits because the WCS bounding_box is completely outside the detector.
2021-08-20 15:52:39,098 - stpipe.AssignWcsStep - INFO - Slits projected on detector NRS2: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57]
2021-08-20 15:52:39,098 - stpipe.AssignWcsStep - INFO - Computing WCS for 57 open slitlets
2021-08-20 15:52:39,129 - stpipe.AssignWcsStep - INFO - gwa_ytilt is 0.1260581910610199 deg
2021-08-20 15:52:39,129 - stpipe.AssignWcsStep - INFO - gwa_xtilt is 0.3316612243652344 deg
2021-08-20 15:52:39,130 - stpipe.AssignWcsStep - INFO - theta_y correction: 0.0002496099796717191 deg
2021-08-20 15:52:39,132 - stpipe.AssignWcsStep - INFO - theta_x correction: 0.0 deg
2021-08-20 15:52:39,142 - stpipe.AssignWcsStep - INFO - SPORDER= -1, wrange=[9.7e-07, 1.89e-06]
2021-08-20 15:52:39,267 - stpipe.AssignWcsStep - INFO - There are 27 open slits in quadrant 1
2021-08-20 15:52:39,511 - stpipe.AssignWcsStep - INFO - There are 27 open slits in quadrant 2
2021-08-20 15:52:39,736 - stpipe.AssignWcsStep - INFO - There are 1 open slits in quadrant 3
2021-08-20 15:52:39,746 - stpipe.AssignWcsStep - INFO - There are 2 open slits in quadrant 4
2021-08-20 15:52:39,765 - stpipe.AssignWcsStep - INFO - There are 0 open slits in quadrant 5
2021-08-20 15:52:39,922 - stpipe.AssignWcsStep - INFO - Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0032.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0023.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': 'V8460001000101_msa.fits'}
2021-08-20 15:52:40,744 - stpipe.AssignWcsStep - INFO - COMPLETED assign_wcs
2021-08-20 15:52:40,751 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep done
2021-08-20 15:52:40,762 - stpipe.MSAFlagOpenStep - INFO - MSAFlagOpenStep instance created.
2021-08-20 15:52:42,427 - stpipe.MSAFlagOpenStep - INFO - Step MSAFlagOpenStep running with args (<ImageModel(2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2021-08-20 15:52:42,434 - stpipe.MSAFlagOpenStep - INFO - Step MSAFlagOpenStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}
2021-08-20 15:52:42,454 - stpipe.MSAFlagOpenStep - INFO - Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json
2021-08-20 15:52:42,456 - stpipe.JwstStep - INFO - JwstStep instance created.
2021-08-20 15:52:42,624 - stpipe.MSAFlagOpenStep - INFO - gwa_ytilt is 0.1260581910610199 deg
2021-08-20 15:52:42,625 - stpipe.MSAFlagOpenStep - INFO - gwa_xtilt is 0.3316612243652344 deg
2021-08-20 15:52:42,626 - stpipe.MSAFlagOpenStep - INFO - theta_y correction: 0.0002496099796717191 deg
2021-08-20 15:52:42,627 - stpipe.MSAFlagOpenStep - INFO - theta_x correction: 0.0 deg
2021-08-20 15:52:42,647 - stpipe.MSAFlagOpenStep - INFO - SPORDER= -1, wrange=[9.7e-07, 1.89e-06]
2021-08-20 15:52:42,775 - stpipe.MSAFlagOpenStep - INFO - There are 5 open slits in quadrant 1
2021-08-20 15:52:42,823 - stpipe.MSAFlagOpenStep - INFO - There are 3 open slits in quadrant 2
2021-08-20 15:52:42,854 - stpipe.MSAFlagOpenStep - INFO - There are 9 open slits in quadrant 3
2021-08-20 15:52:42,937 - stpipe.MSAFlagOpenStep - INFO - There are 3 open slits in quadrant 4
2021-08-20 15:52:42,966 - stpipe.MSAFlagOpenStep - INFO - There are 0 open slits in quadrant 5
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/gwcs/geometry.py:203: RuntimeWarning: invalid value encountered in remainder
lon = np.mod(lon, 360.0 * u.deg if nquant else 360.0)
2021-08-20 15:53:01,715 - stpipe.MSAFlagOpenStep - INFO - Step MSAFlagOpenStep done
2021-08-20 15:53:01,727 - stpipe.Extract2dStep - INFO - Extract2dStep instance created.
2021-08-20 15:53:03,321 - stpipe.Extract2dStep - INFO - Step Extract2dStep running with args (<ImageModel(2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2021-08-20 15:53:03,327 - stpipe.Extract2dStep - INFO - Step Extract2dStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}
2021-08-20 15:53:03,357 - stpipe.Extract2dStep - INFO - EXP_TYPE is NRS_MSASPEC
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/gwcs/utils.py:72: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
indx = np.asarray(np.floor(np.asarray(value) + 0.5), dtype=np.int)
2021-08-20 15:53:04,405 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 6
2021-08-20 15:53:04,406 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 138 1619
2021-08-20 15:53:04,407 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1761 1785
2021-08-20 15:53:04,567 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:04,579 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.263159350 -45.671304678 156.263027991 -45.671181725 156.262965146 -45.671213584 156.263096502 -45.671336538
2021-08-20 15:53:04,580 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.263159350 -45.671304678 156.263027991 -45.671181725 156.262965146 -45.671213584 156.263096502 -45.671336538
2021-08-20 15:53:06,863 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 7
2021-08-20 15:53:06,865 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 138 1619
2021-08-20 15:53:06,865 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1756 1780
2021-08-20 15:53:07,024 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:07,037 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.263031777 -45.671185268 156.262900430 -45.671062325 156.262837587 -45.671094183 156.262968931 -45.671217127
2021-08-20 15:53:07,038 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.263031777 -45.671185268 156.262900430 -45.671062325 156.262837587 -45.671094183 156.262968931 -45.671217127
2021-08-20 15:53:08,071 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 8
2021-08-20 15:53:08,073 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 137 1618
2021-08-20 15:53:08,074 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1806 1830
2021-08-20 15:53:08,239 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:08,254 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.264221225 -45.672423837 156.264089757 -45.672300789 156.264026890 -45.672332658 156.264158355 -45.672455707
2021-08-20 15:53:08,255 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.264221225 -45.672423837 156.264089757 -45.672300789 156.264026890 -45.672332658 156.264158355 -45.672455707
2021-08-20 15:53:10,771 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 9
2021-08-20 15:53:10,773 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 137 1618
2021-08-20 15:53:10,774 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1801 1825
2021-08-20 15:53:10,941 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:10,954 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.264093546 -45.672304335 156.263962090 -45.672181297 156.263899225 -45.672213165 156.264030678 -45.672336204
2021-08-20 15:53:10,956 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.264093546 -45.672304335 156.263962090 -45.672181297 156.263899225 -45.672213165 156.264030678 -45.672336204
2021-08-20 15:53:12,012 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 10
2021-08-20 15:53:12,013 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 137 1618
2021-08-20 15:53:12,014 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1796 1820
2021-08-20 15:53:12,183 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:12,203 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.263965879 -45.672184843 156.263834436 -45.672061816 156.263771574 -45.672093683 156.263903014 -45.672216711
2021-08-20 15:53:12,205 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.263965879 -45.672184843 156.263834436 -45.672061816 156.263771574 -45.672093683 156.263903014 -45.672216711
2021-08-20 15:53:14,764 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 11
2021-08-20 15:53:14,766 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 136 1617
2021-08-20 15:53:14,767 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1836 1860
2021-08-20 15:53:14,934 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:14,945 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.264900700 -45.673185083 156.264769161 -45.673061972 156.264706280 -45.673093849 156.264837816 -45.673216961
2021-08-20 15:53:14,947 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.264900700 -45.673185083 156.264769161 -45.673061972 156.264706280 -45.673093849 156.264837816 -45.673216961
2021-08-20 15:53:17,364 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 14
2021-08-20 15:53:17,366 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 104 1582
2021-08-20 15:53:17,366 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1221 1243
2021-08-20 15:53:17,536 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:17,548 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.249021000 -45.658685479 156.248891047 -45.658563629 156.248828487 -45.658595378 156.248958437 -45.658717230
2021-08-20 15:53:17,549 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.249021000 -45.658685479 156.248891047 -45.658563629 156.248828487 -45.658595378 156.248958437 -45.658717230
2021-08-20 15:53:18,578 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 15
2021-08-20 15:53:18,579 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 122 1604
2021-08-20 15:53:18,580 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1886 1910
2021-08-20 15:53:18,744 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:18,757 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.265657550 -45.674645528 156.265525910 -45.674522304 156.265463012 -45.674554193 156.265594650 -45.674677417
2021-08-20 15:53:18,758 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.265657550 -45.674645528 156.265525910 -45.674522304 156.265463012 -45.674554193 156.265594650 -45.674677417
2021-08-20 15:53:20,613 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 16
2021-08-20 15:53:20,614 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 117 1598
2021-08-20 15:53:20,615 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1821 1845
2021-08-20 15:53:20,835 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:20,845 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.263909649 -45.673134588 156.263778173 -45.673011497 156.263715311 -45.673043371 156.263846784 -45.673166463
2021-08-20 15:53:20,847 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.263909649 -45.673134588 156.263778173 -45.673011497 156.263715311 -45.673043371 156.263846784 -45.673166463
2021-08-20 15:53:21,790 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 17
2021-08-20 15:53:21,791 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 115 1597
2021-08-20 15:53:21,791 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1851 1875
2021-08-20 15:53:21,952 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:21,962 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.264589177 -45.673896098 156.264457630 -45.673772943 156.264394753 -45.673804824 156.264526298 -45.673927980
2021-08-20 15:53:21,963 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.264589177 -45.673896098 156.264457630 -45.673772943 156.264394753 -45.673804824 156.264526298 -45.673927980
2021-08-20 15:53:23,849 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 18
2021-08-20 15:53:23,851 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 115 1597
2021-08-20 15:53:23,851 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1846 1870
2021-08-20 15:53:24,025 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:24,036 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.264461421 -45.673776492 156.264329887 -45.673653347 156.264267013 -45.673685227 156.264398544 -45.673808373
2021-08-20 15:53:24,037 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.264461421 -45.673776492 156.264329887 -45.673653347 156.264267013 -45.673685227 156.264398544 -45.673808373
2021-08-20 15:53:25,038 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 19
2021-08-20 15:53:25,041 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 93 1571
2021-08-20 15:53:25,041 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1336 1358
2021-08-20 15:53:25,199 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:25,209 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.251408362 -45.661673296 156.251278132 -45.661551203 156.251215522 -45.661582975 156.251345749 -45.661705069
2021-08-20 15:53:25,210 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.251408362 -45.661673296 156.251278132 -45.661551203 156.251215522 -45.661582975 156.251345749 -45.661705069
2021-08-20 15:53:27,064 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 21
2021-08-20 15:53:27,066 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 89 1568
2021-08-20 15:53:27,066 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1381 1403
2021-08-20 15:53:27,223 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:27,232 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.252374207 -45.662828704 156.252243867 -45.662706516 156.252181238 -45.662738296 156.252311575 -45.662860485
2021-08-20 15:53:27,233 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.252374207 -45.662828704 156.252243867 -45.662706516 156.252181238 -45.662738296 156.252311575 -45.662860485
2021-08-20 15:53:28,195 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 25
2021-08-20 15:53:28,196 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 70 1547
2021-08-20 15:53:28,196 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1276 1298
2021-08-20 15:53:28,353 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:28,365 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.249200048 -45.660601994 156.249070003 -45.660480012 156.249007436 -45.660511773 156.249137478 -45.660633755
2021-08-20 15:53:28,366 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.249200048 -45.660601994 156.249070003 -45.660480012 156.249007436 -45.660511773 156.249137478 -45.660633755
2021-08-20 15:53:30,175 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 26
2021-08-20 15:53:30,176 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 65 1544
2021-08-20 15:53:30,177 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1562 1584
2021-08-20 15:53:30,331 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:30,347 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.255900113 -45.667634746 156.255769353 -45.667512168 156.255706649 -45.667543987 156.255837406 -45.667666566
2021-08-20 15:53:30,348 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.255900113 -45.667634746 156.255769353 -45.667512168 156.255706649 -45.667543987 156.255837406 -45.667666566
2021-08-20 15:53:31,316 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 27
2021-08-20 15:53:31,317 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 31 1507
2021-08-20 15:53:31,318 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1201 1222
2021-08-20 15:53:31,476 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:31,487 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.246097982 -45.659439921 156.245968181 -45.659318074 156.245905674 -45.659349821 156.246035471 -45.659471670
2021-08-20 15:53:31,488 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.246097982 -45.659439921 156.245968181 -45.659318074 156.245905674 -45.659349821 156.246035471 -45.659471670
2021-08-20 15:53:33,306 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 29
2021-08-20 15:53:33,308 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 22 1503
2021-08-20 15:53:33,309 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1867 1889
2021-08-20 15:53:33,478 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:33,489 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.261846987 -45.675840555 156.261715536 -45.675717309 156.261652705 -45.675749201 156.261784154 -45.675872448
2021-08-20 15:53:33,490 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.261846987 -45.675840555 156.261715536 -45.675717309 156.261652705 -45.675749201 156.261784154 -45.675872448
2021-08-20 15:53:34,544 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 31
2021-08-20 15:53:34,545 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 1464
2021-08-20 15:53:34,545 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1367 1388
2021-08-20 15:53:34,704 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:34,716 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.248622769 -45.664184605 156.248492610 -45.664062392 156.248430047 -45.664094174 156.248560203 -45.664216388
2021-08-20 15:53:34,718 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.248622769 -45.664184605 156.248492610 -45.664062392 156.248430047 -45.664094174 156.248560203 -45.664216388
2021-08-20 15:53:36,492 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 32
2021-08-20 15:53:36,493 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 1432
2021-08-20 15:53:36,494 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1352 1372
2021-08-20 15:53:36,638 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:36,650 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.247206881 -45.664355302 156.247076805 -45.664233103 156.247014266 -45.664264884 156.247144339 -45.664387085
2021-08-20 15:53:36,651 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.247206881 -45.664355302 156.247076805 -45.664233103 156.247014266 -45.664264884 156.247144339 -45.664387085
2021-08-20 15:53:37,564 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 33
2021-08-20 15:53:37,566 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 1418
2021-08-20 15:53:37,567 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1272 1292
2021-08-20 15:53:37,715 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:37,726 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.244841867 -45.662633161 156.244712012 -45.662511121 156.244649520 -45.662542887 156.244779372 -45.662664928
2021-08-20 15:53:37,727 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.244841867 -45.662633161 156.244712012 -45.662511121 156.244649520 -45.662542887 156.244779372 -45.662664928
2021-08-20 15:53:39,512 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 35
2021-08-20 15:53:39,513 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 1428
2021-08-20 15:53:39,513 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1722 1743
2021-08-20 15:53:39,658 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:39,668 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.255896650 -45.673517700 156.255765657 -45.673394713 156.255702938 -45.673426578 156.255833929 -45.673549566
2021-08-20 15:53:39,669 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.255896650 -45.673517700 156.255765657 -45.673394713 156.255702938 -45.673426578 156.255833929 -45.673549566
2021-08-20 15:53:40,593 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 37
2021-08-20 15:53:40,594 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 1412
2021-08-20 15:53:40,595 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1663 1683
2021-08-20 15:53:40,741 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:40,752 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.253937935 -45.672305027 156.253807112 -45.672182158 156.253744431 -45.672214010 156.253875252 -45.672336880
2021-08-20 15:53:40,753 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.253937935 -45.672305027 156.253807112 -45.672182158 156.253744431 -45.672214010 156.253875252 -45.672336880
2021-08-20 15:53:42,680 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 38
2021-08-20 15:53:42,682 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 1404
2021-08-20 15:53:42,683 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1603 1623
2021-08-20 15:53:42,836 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:42,847 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.252241050 -45.670961715 156.252110387 -45.670838969 156.252047741 -45.670870808 156.252178401 -45.670993555
2021-08-20 15:53:42,848 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.252241050 -45.670961715 156.252110387 -45.670838969 156.252047741 -45.670870808 156.252178401 -45.670993555
2021-08-20 15:53:43,833 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 39
2021-08-20 15:53:43,835 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 1385
2021-08-20 15:53:43,836 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1242 1262
2021-08-20 15:53:43,991 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:44,002 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.243049984 -45.662448591 156.242920250 -45.662326596 156.242857790 -45.662358358 156.242987521 -45.662480354
2021-08-20 15:53:44,004 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.243049984 -45.662448591 156.242920250 -45.662326596 156.242857790 -45.662358358 156.242987521 -45.662480354
2021-08-20 15:53:45,915 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 41
2021-08-20 15:53:45,918 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 1393
2021-08-20 15:53:45,919 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1768 1788
2021-08-20 15:53:46,064 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:46,074 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.255829101 -45.675209536 156.255698046 -45.675086431 156.255635323 -45.675118310 156.255766375 -45.675241415
2021-08-20 15:53:46,076 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.255829101 -45.675209536 156.255698046 -45.675086431 156.255635323 -45.675118310 156.255766375 -45.675241415
2021-08-20 15:53:47,006 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 53
2021-08-20 15:53:47,007 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 819
2021-08-20 15:53:47,008 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1315 1329
2021-08-20 15:53:47,148 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:47,158 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.226123221 -45.673642180 156.225994086 -45.673519691 156.225931834 -45.673551545 156.226060967 -45.673674035
2021-08-20 15:53:47,159 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.226123221 -45.673642180 156.225994086 -45.673519691 156.225931834 -45.673551545 156.226060967 -45.673674035
2021-08-20 15:53:49,041 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 54
2021-08-20 15:53:49,043 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 819
2021-08-20 15:53:49,043 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1305 1319
2021-08-20 15:53:49,186 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:49,198 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.225872406 -45.673404272 156.225743296 -45.673281804 156.225681049 -45.673313656 156.225810156 -45.673436124
2021-08-20 15:53:49,199 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.225872406 -45.673404272 156.225743296 -45.673281804 156.225681049 -45.673313656 156.225810156 -45.673436124
2021-08-20 15:53:50,137 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 1
2021-08-20 15:53:50,138 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 118 1591
2021-08-20 15:53:50,138 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 33 52
2021-08-20 15:53:50,287 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:50,299 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.221266819 -45.630196596 156.221139727 -45.630076839 156.221077689 -45.630108429 156.221204778 -45.630228186
2021-08-20 15:53:50,300 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.221266819 -45.630196596 156.221139727 -45.630076839 156.221077689 -45.630108429 156.221204778 -45.630228186
2021-08-20 15:53:52,173 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 2
2021-08-20 15:53:52,174 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 124 1598
2021-08-20 15:53:52,175 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 331 351
2021-08-20 15:53:52,382 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:52,392 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.228476955 -45.637109572 156.228349188 -45.636989367 156.228287022 -45.637020983 156.228414786 -45.637141189
2021-08-20 15:53:52,393 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.228476955 -45.637109572 156.228349188 -45.636989367 156.228287022 -45.637020983 156.228414786 -45.637141189
2021-08-20 15:53:53,330 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 3
2021-08-20 15:53:53,331 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 116 1589
2021-08-20 15:53:53,332 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 54 73
2021-08-20 15:53:53,480 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:53,491 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.221674541 -45.630705151 156.221547408 -45.630585366 156.221485363 -45.630616957 156.221612493 -45.630736743
2021-08-20 15:53:53,492 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.221674541 -45.630705151 156.221547408 -45.630585366 156.221485363 -45.630616957 156.221612493 -45.630736743
2021-08-20 15:53:54,405 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 4
2021-08-20 15:53:54,406 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 111 1584
2021-08-20 15:53:54,406 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 160 179
2021-08-20 15:53:54,551 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:54,562 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.224010549 -45.633278787 156.223883188 -45.633158845 156.223821102 -45.633190445 156.223948460 -45.633310387
2021-08-20 15:53:54,563 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.224010549 -45.633278787 156.223883188 -45.633158845 156.223821102 -45.633190445 156.223948460 -45.633310387
2021-08-20 15:53:56,491 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 5
2021-08-20 15:53:56,492 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 99 1573
2021-08-20 15:53:56,493 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 306 326
2021-08-20 15:53:56,638 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:56,648 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.227084510 -45.636919416 156.226956832 -45.636799245 156.226894691 -45.636830857 156.227022367 -45.636951029
2021-08-20 15:53:56,649 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.227084510 -45.636919416 156.226956832 -45.636799245 156.226894691 -45.636830857 156.227022367 -45.636951029
2021-08-20 15:53:57,581 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 12
2021-08-20 15:53:57,582 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 91 1566
2021-08-20 15:53:57,583 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 483 503
2021-08-20 15:53:57,728 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:57,738 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.230998580 -45.641224458 156.230870498 -45.641103991 156.230808285 -45.641135623 156.230936364 -45.641256090
2021-08-20 15:53:57,739 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.230998580 -45.641224458 156.230870498 -45.641103991 156.230808285 -45.641135623 156.230936364 -45.641256090
2021-08-20 15:53:59,556 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 13
2021-08-20 15:53:59,557 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 80 1553
2021-08-20 15:53:59,557 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 94 113
2021-08-20 15:53:59,701 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:53:59,712 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.221461889 -45.632246282 156.221334710 -45.632126430 156.221272668 -45.632158022 156.221399846 -45.632277874
2021-08-20 15:53:59,713 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.221461889 -45.632246282 156.221334710 -45.632126430 156.221272668 -45.632158022 156.221399846 -45.632277874
2021-08-20 15:54:00,647 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 20
2021-08-20 15:54:00,649 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 76 1551
2021-08-20 15:54:00,650 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 750 770
2021-08-20 15:54:00,879 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:00,891 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.236828252 -45.647826217 156.236699542 -45.647705266 156.236637217 -45.647736933 156.236765924 -45.647857884
2021-08-20 15:54:00,894 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.236828252 -45.647826217 156.236699542 -45.647705266 156.236637217 -45.647736933 156.236765924 -45.647857884
2021-08-20 15:54:02,811 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 22
2021-08-20 15:54:02,812 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 68 1542
2021-08-20 15:54:02,813 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 644 664
2021-08-20 15:54:02,992 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:03,003 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.234035860 -45.645450737 156.233907420 -45.645329977 156.233845148 -45.645361628 156.233973585 -45.645482389
2021-08-20 15:54:03,004 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.234035860 -45.645450737 156.233907420 -45.645329977 156.233845148 -45.645361628 156.233973585 -45.645482389
2021-08-20 15:54:03,952 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 23
2021-08-20 15:54:03,953 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 52 1525
2021-08-20 15:54:03,954 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 115 133
2021-08-20 15:54:04,099 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:04,109 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.221012951 -45.633191592 156.220885760 -45.633071703 156.220823726 -45.633103294 156.220950915 -45.633223183
2021-08-20 15:54:04,111 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.221012951 -45.633191592 156.220885760 -45.633071703 156.220823726 -45.633103294 156.220950915 -45.633223183
2021-08-20 15:54:05,024 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 24
2021-08-20 15:54:05,025 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 69 1545
2021-08-20 15:54:05,026 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 785 805
2021-08-20 15:54:05,170 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:05,179 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.237444560 -45.648779316 156.237315772 -45.648658296 156.237253434 -45.648689968 156.237382219 -45.648810988
2021-08-20 15:54:05,180 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.237444560 -45.648779316 156.237315772 -45.648658296 156.237253434 -45.648689968 156.237382219 -45.648810988
2021-08-20 15:54:07,132 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 28
2021-08-20 15:54:07,133 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 11 1485
2021-08-20 15:54:07,134 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 660 679
2021-08-20 15:54:07,275 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:07,286 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.232517711 -45.646764241 156.232389309 -45.646643431 156.232327062 -45.646675084 156.232455462 -45.646795894
2021-08-20 15:54:07,287 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.232517711 -45.646764241 156.232389309 -45.646643431 156.232327062 -45.646675084 156.232455462 -45.646795894
2021-08-20 15:54:08,209 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 30
2021-08-20 15:54:08,211 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 1457
2021-08-20 15:54:08,211 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 700 719
2021-08-20 15:54:08,359 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:08,371 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.232568977 -45.648183467 156.232440513 -45.648062572 156.232378263 -45.648094230 156.232506725 -45.648215126
2021-08-20 15:54:08,372 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.232568977 -45.648183467 156.232440513 -45.648062572 156.232378263 -45.648094230 156.232506725 -45.648215126
2021-08-20 15:54:10,327 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 34
2021-08-20 15:54:10,328 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 1394
2021-08-20 15:54:10,328 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 715 734
2021-08-20 15:54:10,474 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:10,484 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.230879662 -45.649585075 156.230751242 -45.649464125 156.230689019 -45.649495787 156.230817437 -45.649616737
2021-08-20 15:54:10,486 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.230879662 -45.649585075 156.230751242 -45.649464125 156.230689019 -45.649495787 156.230817437 -45.649616737
2021-08-20 15:54:11,406 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 36
2021-08-20 15:54:11,407 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 1377
2021-08-20 15:54:11,408 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 449 466
2021-08-20 15:54:11,550 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:11,561 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.224033871 -45.643507774 156.223906106 -45.643387302 156.223844011 -45.643418924 156.223971774 -45.643539396
2021-08-20 15:54:11,562 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.224033871 -45.643507774 156.223906106 -45.643387302 156.223844011 -45.643418924 156.223971774 -45.643539396
2021-08-20 15:54:12,484 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 40
2021-08-20 15:54:12,486 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 1343
2021-08-20 15:54:12,486 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 217 234
2021-08-20 15:54:12,630 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:12,641 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.217486084 -45.638574970 156.217358883 -45.638454874 156.217296902 -45.638486467 156.217424102 -45.638606563
2021-08-20 15:54:12,643 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.217486084 -45.638574970 156.217358883 -45.638454874 156.217296902 -45.638486467 156.217424102 -45.638606563
2021-08-20 15:54:14,792 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 42
2021-08-20 15:54:14,793 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 1296
2021-08-20 15:54:14,794 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 545 562
2021-08-20 15:54:14,938 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:14,948 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.223646010 -45.647128995 156.223518121 -45.647008321 156.223456024 -45.647039957 156.223583911 -45.647160632
2021-08-20 15:54:14,949 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.223646010 -45.647128995 156.223518121 -45.647008321 156.223456024 -45.647039957 156.223583911 -45.647160632
2021-08-20 15:54:15,872 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 43
2021-08-20 15:54:15,873 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 1246
2021-08-20 15:54:15,874 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 414 430
2021-08-20 15:54:16,016 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:16,027 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.218966486 -45.644829601 156.218838959 -45.644709141 156.218776943 -45.644740759 156.218904467 -45.644861220
2021-08-20 15:54:16,028 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.218966486 -45.644829601 156.218838959 -45.644709141 156.218776943 -45.644740759 156.218904467 -45.644861220
2021-08-20 15:54:18,031 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 44
2021-08-20 15:54:18,033 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 1246
2021-08-20 15:54:18,033 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 404 420
2021-08-20 15:54:18,175 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:18,186 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.218718991 -45.644595818 156.218591488 -45.644475376 156.218529475 -45.644506992 156.218656977 -45.644627436
2021-08-20 15:54:18,187 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.218718991 -45.644595818 156.218591488 -45.644475376 156.218529475 -45.644506992 156.218656977 -45.644627436
2021-08-20 15:54:19,118 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 45
2021-08-20 15:54:19,120 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 1185
2021-08-20 15:54:19,120 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 530 546
2021-08-20 15:54:19,260 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:19,270 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.219673020 -45.648613077 156.219545303 -45.648492383 156.219483265 -45.648524021 156.219610979 -45.648644716
2021-08-20 15:54:19,272 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.219673020 -45.648613077 156.219545303 -45.648492383 156.219483265 -45.648524021 156.219610979 -45.648644716
2021-08-20 15:54:20,204 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 46
2021-08-20 15:54:20,205 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 1158
2021-08-20 15:54:20,205 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 202 218
2021-08-20 15:54:20,347 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:20,358 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.211127421 -45.641279813 156.211000463 -45.641159678 156.210938572 -45.641191268 156.211065527 -45.641311404
2021-08-20 15:54:20,359 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.211127421 -45.641279813 156.211000463 -45.641159678 156.210938572 -45.641191268 156.211065527 -45.641311404
2021-08-20 15:54:22,457 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 47
2021-08-20 15:54:22,458 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 1091
2021-08-20 15:54:22,459 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 566 581
2021-08-20 15:54:22,599 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:22,610 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.217456055 -45.651006881 156.217328370 -45.650886079 156.217266356 -45.650917729 156.217394038 -45.651038531
2021-08-20 15:54:22,611 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.217456055 -45.651006881 156.217328370 -45.650886079 156.217266356 -45.650917729 156.217394038 -45.651038531
2021-08-20 15:54:23,542 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 48
2021-08-20 15:54:23,543 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 1091
2021-08-20 15:54:23,544 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 561 576
2021-08-20 15:54:23,686 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:23,697 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.217332149 -45.650889654 156.217204477 -45.650768862 156.217142464 -45.650800511 156.217270135 -45.650921304
2021-08-20 15:54:23,698 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.217332149 -45.650889654 156.217204477 -45.650768862 156.217142464 -45.650800511 156.217270135 -45.650921304
2021-08-20 15:54:25,723 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 49
2021-08-20 15:54:25,724 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 1067
2021-08-20 15:54:25,725 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 632 647
2021-08-20 15:54:25,865 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:25,876 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.218210913 -45.652969013 156.218083107 -45.652848076 156.218021073 -45.652879740 156.218148877 -45.653000678
2021-08-20 15:54:25,877 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.218210913 -45.652969013 156.218083107 -45.652848076 156.218021073 -45.652879740 156.218148877 -45.653000678
2021-08-20 15:54:26,813 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 50
2021-08-20 15:54:26,815 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 1048
2021-08-20 15:54:26,815 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 238 253
2021-08-20 15:54:26,977 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:26,989 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.208399869 -45.643929179 156.208272959 -45.643808942 156.208211096 -45.643840541 156.208338005 -45.643960778
2021-08-20 15:54:26,990 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.208399869 -45.643929179 156.208272959 -45.643808942 156.208211096 -45.643840541 156.208338005 -45.643960778
2021-08-20 15:54:27,967 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 51
2021-08-20 15:54:27,969 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 1034
2021-08-20 15:54:27,969 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 430 445
2021-08-20 15:54:28,106 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:28,116 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.212403238 -45.648718689 156.212275928 -45.648598111 156.212213993 -45.648629742 156.212341301 -45.648750320
2021-08-20 15:54:28,117 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.212403238 -45.648718689 156.212275928 -45.648598111 156.212213993 -45.648629742 156.212341301 -45.648750320
2021-08-20 15:54:30,264 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 52
2021-08-20 15:54:30,265 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 998
2021-08-20 15:54:30,266 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 803 817
2021-08-20 15:54:30,408 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:30,419 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.219947139 -45.658234585 156.219819020 -45.658113276 156.219756938 -45.658144979 156.219885055 -45.658266289
2021-08-20 15:54:30,420 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.219947139 -45.658234585 156.219819020 -45.658113276 156.219756938 -45.658144979 156.219885055 -45.658266289
2021-08-20 15:54:31,346 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 55
2021-08-20 15:54:31,347 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 297
2021-08-20 15:54:31,348 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 1415 1430
2021-08-20 15:54:31,484 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:31,495 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.211226719 -45.684941334 156.211098073 -45.684818233 156.211035880 -45.684850241 156.211164524 -45.684973343
2021-08-20 15:54:31,496 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.211226719 -45.684941334 156.211098073 -45.684818233 156.211035880 -45.684850241 156.211164524 -45.684973343
2021-08-20 15:54:32,417 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 56
2021-08-20 15:54:32,419 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 143
2021-08-20 15:54:32,419 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 768 783
2021-08-20 15:54:32,552 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:32,563 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.191122501 -45.671742959 156.190995485 -45.671621176 156.190933579 -45.671653049 156.191060593 -45.671774833
2021-08-20 15:54:32,564 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.191122501 -45.671742959 156.190995485 -45.671621176 156.190933579 -45.671653049 156.191060593 -45.671774833
2021-08-20 15:54:34,688 - stpipe.Extract2dStep - INFO - Name of subarray extracted: 57
2021-08-20 15:54:34,690 - stpipe.Extract2dStep - INFO - Subarray x-extents are: 0 74
2021-08-20 15:54:34,690 - stpipe.Extract2dStep - INFO - Subarray y-extents are: 354 370
2021-08-20 15:54:34,823 - stpipe.Extract2dStep - INFO - set slit_attributes completed
2021-08-20 15:54:34,834 - stpipe.Extract2dStep - INFO - Update S_REGION to POLYGON ICRS 156.179343124 -45.662963603 156.179216994 -45.662842617 156.179155236 -45.662874401 156.179281365 -45.662995389
2021-08-20 15:54:34,835 - stpipe.Extract2dStep - INFO - Updated S_REGION to POLYGON ICRS 156.179343124 -45.662963603 156.179216994 -45.662842617 156.179155236 -45.662874401 156.179281365 -45.662995389
2021-08-20 15:54:37,143 - stpipe.Extract2dStep - INFO - Step Extract2dStep done
2021-08-20 15:54:40,224 - stpipe.SourceTypeStep - INFO - SourceTypeStep instance created.
2021-08-20 15:54:41,406 - stpipe.SourceTypeStep - INFO - Step SourceTypeStep running with args (<MultiSlitModel from mos_g140m_line1_NRS2_uncal.fits>,).
2021-08-20 15:54:41,410 - stpipe.SourceTypeStep - INFO - Step SourceTypeStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}
2021-08-20 15:54:41,418 - stpipe.SourceTypeStep - INFO - Input EXP_TYPE is NRS_MSASPEC
2021-08-20 15:54:41,419 - stpipe.SourceTypeStep - INFO - source_id=6, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,420 - stpipe.SourceTypeStep - INFO - source_id=7, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,421 - stpipe.SourceTypeStep - INFO - source_id=8, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,423 - stpipe.SourceTypeStep - INFO - source_id=9, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,424 - stpipe.SourceTypeStep - INFO - source_id=10, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,425 - stpipe.SourceTypeStep - INFO - source_id=11, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,426 - stpipe.SourceTypeStep - INFO - source_id=14, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,427 - stpipe.SourceTypeStep - INFO - source_id=15, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,428 - stpipe.SourceTypeStep - INFO - source_id=16, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,429 - stpipe.SourceTypeStep - INFO - source_id=17, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,429 - stpipe.SourceTypeStep - INFO - source_id=18, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,430 - stpipe.SourceTypeStep - INFO - source_id=19, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,431 - stpipe.SourceTypeStep - INFO - source_id=21, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,432 - stpipe.SourceTypeStep - INFO - source_id=25, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,433 - stpipe.SourceTypeStep - INFO - source_id=26, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,434 - stpipe.SourceTypeStep - INFO - source_id=27, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,435 - stpipe.SourceTypeStep - INFO - source_id=29, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,436 - stpipe.SourceTypeStep - INFO - source_id=31, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,437 - stpipe.SourceTypeStep - INFO - source_id=32, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,438 - stpipe.SourceTypeStep - INFO - source_id=33, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,439 - stpipe.SourceTypeStep - INFO - source_id=35, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,440 - stpipe.SourceTypeStep - INFO - source_id=37, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,440 - stpipe.SourceTypeStep - INFO - source_id=38, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,441 - stpipe.SourceTypeStep - INFO - source_id=39, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,442 - stpipe.SourceTypeStep - INFO - source_id=41, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,443 - stpipe.SourceTypeStep - INFO - source_id=53, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,444 - stpipe.SourceTypeStep - INFO - source_id=54, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,445 - stpipe.SourceTypeStep - INFO - source_id=1, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,445 - stpipe.SourceTypeStep - INFO - source_id=2, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,446 - stpipe.SourceTypeStep - INFO - source_id=3, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,447 - stpipe.SourceTypeStep - INFO - source_id=4, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,448 - stpipe.SourceTypeStep - INFO - source_id=5, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,451 - stpipe.SourceTypeStep - INFO - source_id=12, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,451 - stpipe.SourceTypeStep - INFO - source_id=13, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,452 - stpipe.SourceTypeStep - INFO - source_id=20, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,453 - stpipe.SourceTypeStep - INFO - source_id=22, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,454 - stpipe.SourceTypeStep - INFO - source_id=23, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,455 - stpipe.SourceTypeStep - INFO - source_id=24, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,456 - stpipe.SourceTypeStep - INFO - source_id=28, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,457 - stpipe.SourceTypeStep - INFO - source_id=30, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,458 - stpipe.SourceTypeStep - INFO - source_id=34, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,459 - stpipe.SourceTypeStep - INFO - source_id=36, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,460 - stpipe.SourceTypeStep - INFO - source_id=40, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,461 - stpipe.SourceTypeStep - INFO - source_id=42, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,462 - stpipe.SourceTypeStep - INFO - source_id=43, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,463 - stpipe.SourceTypeStep - INFO - source_id=44, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,464 - stpipe.SourceTypeStep - INFO - source_id=45, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,465 - stpipe.SourceTypeStep - INFO - source_id=46, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,466 - stpipe.SourceTypeStep - INFO - source_id=47, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,467 - stpipe.SourceTypeStep - INFO - source_id=48, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,467 - stpipe.SourceTypeStep - INFO - source_id=49, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,468 - stpipe.SourceTypeStep - INFO - source_id=50, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,469 - stpipe.SourceTypeStep - INFO - source_id=51, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,470 - stpipe.SourceTypeStep - INFO - source_id=52, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,471 - stpipe.SourceTypeStep - INFO - source_id=55, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,472 - stpipe.SourceTypeStep - INFO - source_id=56, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,473 - stpipe.SourceTypeStep - INFO - source_id=57, stellarity=0.0000, type=EXTENDED
2021-08-20 15:54:41,474 - stpipe.SourceTypeStep - INFO - Step SourceTypeStep done
2021-08-20 15:54:41,599 - stpipe.WavecorrStep - INFO - WavecorrStep instance created.
2021-08-20 15:54:42,507 - stpipe.WavecorrStep - INFO - Step WavecorrStep running with args (<MultiSlitModel from mos_g140m_line1_NRS2_uncal.fits>,).
2021-08-20 15:54:42,509 - stpipe.WavecorrStep - INFO - Step WavecorrStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}
2021-08-20 15:54:42,633 - stpipe.WavecorrStep - INFO - Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf
2021-08-20 15:54:53,422 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 6
2021-08-20 15:54:53,423 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 7
2021-08-20 15:54:53,424 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 8
2021-08-20 15:54:53,425 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 9
2021-08-20 15:54:53,425 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 10
2021-08-20 15:54:53,426 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 11
2021-08-20 15:54:53,427 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 14
2021-08-20 15:54:53,427 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 15
2021-08-20 15:54:53,428 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 16
2021-08-20 15:54:53,428 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 17
2021-08-20 15:54:53,429 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 18
2021-08-20 15:54:53,429 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 19
2021-08-20 15:54:53,430 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 21
2021-08-20 15:54:53,431 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 25
2021-08-20 15:54:53,431 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 26
2021-08-20 15:54:53,432 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 27
2021-08-20 15:54:53,433 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 29
2021-08-20 15:54:53,433 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 31
2021-08-20 15:54:53,434 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 32
2021-08-20 15:54:53,434 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 33
2021-08-20 15:54:53,437 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 35
2021-08-20 15:54:53,438 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 37
2021-08-20 15:54:53,438 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 38
2021-08-20 15:54:53,438 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 39
2021-08-20 15:54:53,439 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 41
2021-08-20 15:54:53,439 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 53
2021-08-20 15:54:53,440 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 54
2021-08-20 15:54:53,440 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 1
2021-08-20 15:54:53,440 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 2
2021-08-20 15:54:53,441 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 3
2021-08-20 15:54:53,441 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 4
2021-08-20 15:54:53,441 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 5
2021-08-20 15:54:53,443 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 12
2021-08-20 15:54:53,443 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 13
2021-08-20 15:54:53,444 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 20
2021-08-20 15:54:53,444 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 22
2021-08-20 15:54:53,444 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 23
2021-08-20 15:54:53,445 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 24
2021-08-20 15:54:53,445 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 28
2021-08-20 15:54:53,445 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 30
2021-08-20 15:54:53,445 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 34
2021-08-20 15:54:53,446 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 36
2021-08-20 15:54:53,446 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 40
2021-08-20 15:54:53,446 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 42
2021-08-20 15:54:53,447 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 43
2021-08-20 15:54:53,447 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 44
2021-08-20 15:54:53,447 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 45
2021-08-20 15:54:53,448 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 46
2021-08-20 15:54:53,448 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 47
2021-08-20 15:54:53,448 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 48
2021-08-20 15:54:53,449 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 49
2021-08-20 15:54:53,449 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 50
2021-08-20 15:54:53,449 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 51
2021-08-20 15:54:53,450 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 52
2021-08-20 15:54:53,450 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 55
2021-08-20 15:54:53,450 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 56
2021-08-20 15:54:53,450 - stpipe.WavecorrStep - INFO - Detected a EXTENDED source type in slit 57
2021-08-20 15:54:53,453 - stpipe.WavecorrStep - INFO - Step WavecorrStep done
2021-08-20 15:54:53,565 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created.
2021-08-20 15:54:55,225 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args (<MultiSlitModel from mos_g140m_line1_NRS2_uncal.fits>,).
2021-08-20 15:54:55,232 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}
2021-08-20 15:55:24,202 - stpipe.FlatFieldStep - INFO - Working on slit 6
2021-08-20 15:55:26,261 - stpipe.FlatFieldStep - INFO - Working on slit 7
2021-08-20 15:55:28,183 - stpipe.FlatFieldStep - INFO - Working on slit 8
2021-08-20 15:55:30,329 - stpipe.FlatFieldStep - INFO - Working on slit 9
2021-08-20 15:55:32,220 - stpipe.FlatFieldStep - INFO - Working on slit 10
2021-08-20 15:55:34,357 - stpipe.FlatFieldStep - INFO - Working on slit 11
2021-08-20 15:55:36,355 - stpipe.FlatFieldStep - INFO - Working on slit 14
2021-08-20 15:55:38,446 - stpipe.FlatFieldStep - INFO - Working on slit 15
2021-08-20 15:55:40,459 - stpipe.FlatFieldStep - INFO - Working on slit 16
2021-08-20 15:55:42,555 - stpipe.FlatFieldStep - INFO - Working on slit 17
2021-08-20 15:55:44,686 - stpipe.FlatFieldStep - INFO - Working on slit 18
2021-08-20 15:55:46,835 - stpipe.FlatFieldStep - INFO - Working on slit 19
2021-08-20 15:55:48,963 - stpipe.FlatFieldStep - INFO - Working on slit 21
2021-08-20 15:55:51,069 - stpipe.FlatFieldStep - INFO - Working on slit 25
2021-08-20 15:55:53,213 - stpipe.FlatFieldStep - INFO - Working on slit 26
2021-08-20 15:55:55,348 - stpipe.FlatFieldStep - INFO - Working on slit 27
2021-08-20 15:55:57,504 - stpipe.FlatFieldStep - INFO - Working on slit 29
2021-08-20 15:55:59,624 - stpipe.FlatFieldStep - INFO - Working on slit 31
2021-08-20 15:56:01,767 - stpipe.FlatFieldStep - INFO - Working on slit 32
2021-08-20 15:56:03,851 - stpipe.FlatFieldStep - INFO - Working on slit 33
2021-08-20 15:56:05,903 - stpipe.FlatFieldStep - INFO - Working on slit 35
2021-08-20 15:56:07,945 - stpipe.FlatFieldStep - INFO - Working on slit 37
2021-08-20 15:56:09,979 - stpipe.FlatFieldStep - INFO - Working on slit 38
2021-08-20 15:56:11,985 - stpipe.FlatFieldStep - INFO - Working on slit 39
2021-08-20 15:56:13,990 - stpipe.FlatFieldStep - INFO - Working on slit 41
2021-08-20 15:56:15,980 - stpipe.FlatFieldStep - INFO - Working on slit 53
2021-08-20 15:56:17,153 - stpipe.FlatFieldStep - INFO - Working on slit 54
2021-08-20 15:56:18,324 - stpipe.FlatFieldStep - INFO - Working on slit 1
2021-08-20 15:56:20,473 - stpipe.FlatFieldStep - INFO - Working on slit 2
2021-08-20 15:56:22,601 - stpipe.FlatFieldStep - INFO - Working on slit 3
2021-08-20 15:56:24,731 - stpipe.FlatFieldStep - INFO - Working on slit 4
2021-08-20 15:56:26,867 - stpipe.FlatFieldStep - INFO - Working on slit 5
2021-08-20 15:56:28,978 - stpipe.FlatFieldStep - INFO - Working on slit 12
2021-08-20 15:56:31,119 - stpipe.FlatFieldStep - INFO - Working on slit 13
2021-08-20 15:56:33,292 - stpipe.FlatFieldStep - INFO - Working on slit 20
2021-08-20 15:56:35,422 - stpipe.FlatFieldStep - INFO - Working on slit 22
2021-08-20 15:56:37,558 - stpipe.FlatFieldStep - INFO - Working on slit 23
2021-08-20 15:56:39,686 - stpipe.FlatFieldStep - INFO - Working on slit 24
2021-08-20 15:56:41,781 - stpipe.FlatFieldStep - INFO - Working on slit 28
2021-08-20 15:56:43,865 - stpipe.FlatFieldStep - INFO - Working on slit 30
2021-08-20 15:56:45,873 - stpipe.FlatFieldStep - INFO - Working on slit 34
2021-08-20 15:56:47,815 - stpipe.FlatFieldStep - INFO - Working on slit 36
2021-08-20 15:56:49,731 - stpipe.FlatFieldStep - INFO - Working on slit 40
2021-08-20 15:56:51,609 - stpipe.FlatFieldStep - INFO - Working on slit 42
2021-08-20 15:56:53,436 - stpipe.FlatFieldStep - INFO - Working on slit 43
2021-08-20 15:56:55,187 - stpipe.FlatFieldStep - INFO - Working on slit 44
2021-08-20 15:56:56,940 - stpipe.FlatFieldStep - INFO - Working on slit 45
2021-08-20 15:56:58,655 - stpipe.FlatFieldStep - INFO - Working on slit 46
2021-08-20 15:57:00,313 - stpipe.FlatFieldStep - INFO - Working on slit 47
2021-08-20 15:57:01,827 - stpipe.FlatFieldStep - INFO - Working on slit 48
2021-08-20 15:57:03,368 - stpipe.FlatFieldStep - INFO - Working on slit 49
2021-08-20 15:57:04,897 - stpipe.FlatFieldStep - INFO - Working on slit 50
2021-08-20 15:57:06,420 - stpipe.FlatFieldStep - INFO - Working on slit 51
2021-08-20 15:57:07,932 - stpipe.FlatFieldStep - INFO - Working on slit 52
2021-08-20 15:57:09,401 - stpipe.FlatFieldStep - INFO - Working on slit 55
2021-08-20 15:57:09,899 - stpipe.FlatFieldStep - INFO - Working on slit 56
2021-08-20 15:57:10,204 - stpipe.FlatFieldStep - INFO - Working on slit 57
2021-08-20 15:57:14,029 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done
2021-08-20 15:57:14,136 - stpipe.PathLossStep - INFO - PathLossStep instance created.
2021-08-20 15:57:15,876 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from mos_g140m_line1_NRS2_uncal.fits>,).
2021-08-20 15:57:15,884 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}
2021-08-20 15:57:16,008 - stpipe.PathLossStep - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits
2021-08-20 15:57:16,047 - stpipe.PathLossStep - INFO - Input exposure type is NRS_MSASPEC
2021-08-20 15:57:26,465 - stpipe.PathLossStep - INFO - Working on slit 0
2021-08-20 15:57:26,484 - stpipe.PathLossStep - INFO - Working on slit 1
2021-08-20 15:57:26,502 - stpipe.PathLossStep - INFO - Working on slit 2
2021-08-20 15:57:26,520 - stpipe.PathLossStep - INFO - Working on slit 3
2021-08-20 15:57:26,539 - stpipe.PathLossStep - INFO - Working on slit 4
2021-08-20 15:57:26,560 - stpipe.PathLossStep - INFO - Working on slit 5
2021-08-20 15:57:26,581 - stpipe.PathLossStep - INFO - Working on slit 6
2021-08-20 15:57:26,599 - stpipe.PathLossStep - INFO - Working on slit 7
2021-08-20 15:57:26,617 - stpipe.PathLossStep - INFO - Working on slit 8
2021-08-20 15:57:26,636 - stpipe.PathLossStep - INFO - Working on slit 9
2021-08-20 15:57:26,654 - stpipe.PathLossStep - INFO - Working on slit 10
2021-08-20 15:57:26,671 - stpipe.PathLossStep - INFO - Working on slit 11
2021-08-20 15:57:26,689 - stpipe.PathLossStep - INFO - Working on slit 12
2021-08-20 15:57:26,708 - stpipe.PathLossStep - INFO - Working on slit 13
2021-08-20 15:57:26,726 - stpipe.PathLossStep - INFO - Working on slit 14
2021-08-20 15:57:26,744 - stpipe.PathLossStep - INFO - Working on slit 15
2021-08-20 15:57:26,761 - stpipe.PathLossStep - INFO - Working on slit 16
2021-08-20 15:57:26,781 - stpipe.PathLossStep - INFO - Working on slit 17
2021-08-20 15:57:26,799 - stpipe.PathLossStep - INFO - Working on slit 18
2021-08-20 15:57:26,816 - stpipe.PathLossStep - INFO - Working on slit 19
2021-08-20 15:57:26,835 - stpipe.PathLossStep - INFO - Working on slit 20
2021-08-20 15:57:26,855 - stpipe.PathLossStep - INFO - Working on slit 21
2021-08-20 15:57:26,874 - stpipe.PathLossStep - INFO - Working on slit 22
2021-08-20 15:57:26,892 - stpipe.PathLossStep - INFO - Working on slit 23
2021-08-20 15:57:26,910 - stpipe.PathLossStep - INFO - Working on slit 24
2021-08-20 15:57:26,931 - stpipe.PathLossStep - INFO - Working on slit 25
2021-08-20 15:57:26,948 - stpipe.PathLossStep - INFO - Working on slit 26
2021-08-20 15:57:26,965 - stpipe.PathLossStep - INFO - Working on slit 27
2021-08-20 15:57:26,982 - stpipe.PathLossStep - INFO - Working on slit 28
2021-08-20 15:57:27,003 - stpipe.PathLossStep - INFO - Working on slit 29
2021-08-20 15:57:27,021 - stpipe.PathLossStep - INFO - Working on slit 30
2021-08-20 15:57:27,039 - stpipe.PathLossStep - INFO - Working on slit 31
2021-08-20 15:57:27,057 - stpipe.PathLossStep - INFO - Working on slit 32
2021-08-20 15:57:27,077 - stpipe.PathLossStep - INFO - Working on slit 33
2021-08-20 15:57:27,094 - stpipe.PathLossStep - INFO - Working on slit 34
2021-08-20 15:57:27,112 - stpipe.PathLossStep - INFO - Working on slit 35
2021-08-20 15:57:27,129 - stpipe.PathLossStep - INFO - Working on slit 36
2021-08-20 15:57:27,149 - stpipe.PathLossStep - INFO - Working on slit 37
2021-08-20 15:57:27,167 - stpipe.PathLossStep - INFO - Working on slit 38
2021-08-20 15:57:27,185 - stpipe.PathLossStep - INFO - Working on slit 39
2021-08-20 15:57:27,203 - stpipe.PathLossStep - INFO - Working on slit 40
2021-08-20 15:57:27,223 - stpipe.PathLossStep - INFO - Working on slit 41
2021-08-20 15:57:27,241 - stpipe.PathLossStep - INFO - Working on slit 42
2021-08-20 15:57:27,259 - stpipe.PathLossStep - INFO - Working on slit 43
2021-08-20 15:57:27,278 - stpipe.PathLossStep - INFO - Working on slit 44
2021-08-20 15:57:27,299 - stpipe.PathLossStep - INFO - Working on slit 45
2021-08-20 15:57:27,317 - stpipe.PathLossStep - INFO - Working on slit 46
2021-08-20 15:57:27,334 - stpipe.PathLossStep - INFO - Working on slit 47
2021-08-20 15:57:27,352 - stpipe.PathLossStep - INFO - Working on slit 48
2021-08-20 15:57:27,372 - stpipe.PathLossStep - INFO - Working on slit 49
2021-08-20 15:57:27,389 - stpipe.PathLossStep - INFO - Working on slit 50
2021-08-20 15:57:27,406 - stpipe.PathLossStep - INFO - Working on slit 51
2021-08-20 15:57:27,424 - stpipe.PathLossStep - INFO - Working on slit 52
2021-08-20 15:57:27,443 - stpipe.PathLossStep - INFO - Working on slit 53
2021-08-20 15:57:27,460 - stpipe.PathLossStep - INFO - Working on slit 54
2021-08-20 15:57:27,477 - stpipe.PathLossStep - INFO - Working on slit 55
2021-08-20 15:57:27,494 - stpipe.PathLossStep - INFO - Working on slit 56
2021-08-20 15:57:27,514 - stpipe.PathLossStep - INFO - Step PathLossStep done
2021-08-20 15:57:27,622 - stpipe.BarShadowStep - INFO - BarShadowStep instance created.
2021-08-20 15:57:29,117 - stpipe.BarShadowStep - INFO - Step BarShadowStep running with args (<MultiSlitModel from mos_g140m_line1_NRS2_uncal.fits>,).
2021-08-20 15:57:29,122 - stpipe.BarShadowStep - INFO - Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}
2021-08-20 15:57:29,244 - stpipe.BarShadowStep - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits
2021-08-20 15:57:40,720 - stpipe.BarShadowStep - INFO - Working on slitlet 6
2021-08-20 15:57:40,856 - stpipe.BarShadowStep - INFO - Working on slitlet 7
2021-08-20 15:57:40,987 - stpipe.BarShadowStep - INFO - Working on slitlet 8
2021-08-20 15:57:41,117 - stpipe.BarShadowStep - INFO - Working on slitlet 9
2021-08-20 15:57:41,246 - stpipe.BarShadowStep - INFO - Working on slitlet 10
2021-08-20 15:57:41,377 - stpipe.BarShadowStep - INFO - Working on slitlet 11
2021-08-20 15:57:41,507 - stpipe.BarShadowStep - INFO - Working on slitlet 14
2021-08-20 15:57:41,630 - stpipe.BarShadowStep - INFO - Working on slitlet 15
2021-08-20 15:57:41,762 - stpipe.BarShadowStep - INFO - Working on slitlet 16
2021-08-20 15:57:41,892 - stpipe.BarShadowStep - INFO - Working on slitlet 17
2021-08-20 15:57:42,024 - stpipe.BarShadowStep - INFO - Working on slitlet 18
2021-08-20 15:57:42,161 - stpipe.BarShadowStep - INFO - Working on slitlet 19
2021-08-20 15:57:42,287 - stpipe.BarShadowStep - INFO - Working on slitlet 21
2021-08-20 15:57:42,411 - stpipe.BarShadowStep - INFO - Working on slitlet 25
2021-08-20 15:57:42,537 - stpipe.BarShadowStep - INFO - Working on slitlet 26
2021-08-20 15:57:42,660 - stpipe.BarShadowStep - INFO - Working on slitlet 27
2021-08-20 15:57:42,787 - stpipe.BarShadowStep - INFO - Working on slitlet 29
2021-08-20 15:57:42,918 - stpipe.BarShadowStep - INFO - Working on slitlet 31
2021-08-20 15:57:43,046 - stpipe.BarShadowStep - INFO - Working on slitlet 32
2021-08-20 15:57:43,162 - stpipe.BarShadowStep - INFO - Working on slitlet 33
2021-08-20 15:57:43,280 - stpipe.BarShadowStep - INFO - Working on slitlet 35
2021-08-20 15:57:43,399 - stpipe.BarShadowStep - INFO - Working on slitlet 37
2021-08-20 15:57:43,516 - stpipe.BarShadowStep - INFO - Working on slitlet 38
2021-08-20 15:57:43,631 - stpipe.BarShadowStep - INFO - Working on slitlet 39
2021-08-20 15:57:43,746 - stpipe.BarShadowStep - INFO - Working on slitlet 41
2021-08-20 15:57:43,860 - stpipe.BarShadowStep - INFO - Working on slitlet 53
2021-08-20 15:57:43,929 - stpipe.BarShadowStep - INFO - Working on slitlet 54
2021-08-20 15:57:43,997 - stpipe.BarShadowStep - INFO - Working on slitlet 1
2021-08-20 15:57:44,114 - stpipe.BarShadowStep - INFO - Working on slitlet 2
2021-08-20 15:57:44,238 - stpipe.BarShadowStep - INFO - Working on slitlet 3
2021-08-20 15:57:44,354 - stpipe.BarShadowStep - INFO - Working on slitlet 4
2021-08-20 15:57:44,470 - stpipe.BarShadowStep - INFO - Working on slitlet 5
2021-08-20 15:57:44,590 - stpipe.BarShadowStep - INFO - Working on slitlet 12
2021-08-20 15:57:44,776 - stpipe.BarShadowStep - INFO - Working on slitlet 13
2021-08-20 15:57:44,970 - stpipe.BarShadowStep - INFO - Working on slitlet 20
2021-08-20 15:57:45,180 - stpipe.BarShadowStep - INFO - Working on slitlet 22
2021-08-20 15:57:45,301 - stpipe.BarShadowStep - INFO - Working on slitlet 23
2021-08-20 15:57:45,412 - stpipe.BarShadowStep - INFO - Working on slitlet 24
2021-08-20 15:57:45,532 - stpipe.BarShadowStep - INFO - Working on slitlet 28
2021-08-20 15:57:45,645 - stpipe.BarShadowStep - INFO - Working on slitlet 30
2021-08-20 15:57:45,759 - stpipe.BarShadowStep - INFO - Working on slitlet 34
2021-08-20 15:57:45,871 - stpipe.BarShadowStep - INFO - Working on slitlet 36
2021-08-20 15:57:45,974 - stpipe.BarShadowStep - INFO - Working on slitlet 40
2021-08-20 15:57:46,075 - stpipe.BarShadowStep - INFO - Working on slitlet 42
2021-08-20 15:57:46,175 - stpipe.BarShadowStep - INFO - Working on slitlet 43
2021-08-20 15:57:46,268 - stpipe.BarShadowStep - INFO - Working on slitlet 44
2021-08-20 15:57:46,361 - stpipe.BarShadowStep - INFO - Working on slitlet 45
2021-08-20 15:57:46,453 - stpipe.BarShadowStep - INFO - Working on slitlet 46
2021-08-20 15:57:46,542 - stpipe.BarShadowStep - INFO - Working on slitlet 47
2021-08-20 15:57:46,625 - stpipe.BarShadowStep - INFO - Working on slitlet 48
2021-08-20 15:57:46,711 - stpipe.BarShadowStep - INFO - Working on slitlet 49
2021-08-20 15:57:46,792 - stpipe.BarShadowStep - INFO - Working on slitlet 50
2021-08-20 15:57:46,874 - stpipe.BarShadowStep - INFO - Working on slitlet 51
2021-08-20 15:57:46,956 - stpipe.BarShadowStep - INFO - Working on slitlet 52
2021-08-20 15:57:47,032 - stpipe.BarShadowStep - INFO - Working on slitlet 55
2021-08-20 15:57:47,072 - stpipe.BarShadowStep - INFO - Working on slitlet 56
2021-08-20 15:57:47,104 - stpipe.BarShadowStep - INFO - Working on slitlet 57
2021-08-20 15:57:47,134 - stpipe.BarShadowStep - INFO - Step BarShadowStep done
Looping over open slitlets... Working with slitlet 6 Slitlet name in fits file previous to barshadow and in barshadow output file are the same. Calculating barshadow correction... Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits Calculation of barshadow correction done. nan nan Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.016e-03 median = -6.641e-05 stdev = 5.836e-03
Maximum Relativebarshadow_correction = 1.718e-03
Minimum Relativebarshadow_correction = -2.815e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 10%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 6? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 7
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.018e-03 median = -6.669e-05 stdev = 5.843e-03
Maximum Relativebarshadow_correction = 1.708e-03
Minimum Relativebarshadow_correction = -2.869e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 10%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 7? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 8
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.994e-03 median = -6.250e-05 stdev = 5.798e-03
Maximum Relativebarshadow_correction = 1.902e-03
Minimum Relativebarshadow_correction = -2.855e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 8? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 9
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.003e-03 median = -6.510e-05 stdev = 5.814e-03
Maximum Relativebarshadow_correction = 1.475e-03
Minimum Relativebarshadow_correction = -2.841e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 9? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 10
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.005e-03 median = -6.453e-05 stdev = 5.819e-03
Maximum Relativebarshadow_correction = 1.839e-03
Minimum Relativebarshadow_correction = -2.832e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 10? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 11
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.979e-03 median = -6.470e-05 stdev = 5.777e-03
Maximum Relativebarshadow_correction = 1.923e-03
Minimum Relativebarshadow_correction = -2.812e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 11? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 14
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.025e-03 median = -6.299e-05 stdev = 5.859e-03
Maximum Relativebarshadow_correction = 1.204e-03
Minimum Relativebarshadow_correction = -2.914e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 10%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 14? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 15
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.978e-03 median = -6.246e-05 stdev = 5.778e-03
Maximum Relativebarshadow_correction = 1.915e-03
Minimum Relativebarshadow_correction = -2.869e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 15? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 16
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.036e-03 median = -6.537e-05 stdev = 5.877e-03
Maximum Relativebarshadow_correction = 1.679e-03
Minimum Relativebarshadow_correction = -2.866e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 10%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 16? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 17
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.017e-03 median = -6.536e-05 stdev = 5.839e-03
Maximum Relativebarshadow_correction = 1.718e-03
Minimum Relativebarshadow_correction = -2.817e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 10%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 17? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 18
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.025e-03 median = -6.563e-05 stdev = 5.855e-03
Maximum Relativebarshadow_correction = 1.725e-03
Minimum Relativebarshadow_correction = -2.825e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 10%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 18? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 19
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.039e-03 median = -6.201e-05 stdev = 5.949e-03
Maximum Relativebarshadow_correction = 1.905e-03
Minimum Relativebarshadow_correction = -2.937e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 19? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 21
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.992e-03 median = -6.215e-05 stdev = 5.883e-03
Maximum Relativebarshadow_correction = 1.457e-03
Minimum Relativebarshadow_correction = -2.892e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 21? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 25
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.044e-03 median = -6.318e-05 stdev = 5.970e-03
Maximum Relativebarshadow_correction = 1.541e-03
Minimum Relativebarshadow_correction = -2.959e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 25? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 26
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.911e-03 median = -6.285e-05 stdev = 5.688e-03
Maximum Relativebarshadow_correction = 1.757e-03
Minimum Relativebarshadow_correction = -2.821e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 19%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 26? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 27
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.986e-03 median = -6.222e-05 stdev = 5.903e-03
Maximum Relativebarshadow_correction = 1.925e-03
Minimum Relativebarshadow_correction = -2.912e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 27? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 29
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.895e-03 median = -6.237e-05 stdev = 5.662e-03
Maximum Relativebarshadow_correction = 2.029e-03
Minimum Relativebarshadow_correction = -2.941e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 19%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 29? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 31
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.076e-03 median = -6.825e-05 stdev = 5.930e-03
Maximum Relativebarshadow_correction = 1.367e-03
Minimum Relativebarshadow_correction = -2.841e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 10%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 31? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 32
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.080e-03 median = -6.567e-05 stdev = 6.014e-03
Maximum Relativebarshadow_correction = 1.415e-03
Minimum Relativebarshadow_correction = -2.816e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 32? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 33
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.096e-03 median = -5.948e-05 stdev = 5.997e-03
Maximum Relativebarshadow_correction = 2.072e-03
Minimum Relativebarshadow_correction = -2.881e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 26%
-> 3xtheshold = 18%
-> 5xtheshold = 10%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 33? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 35
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.821e-03 median = -6.305e-05 stdev = 5.559e-03
Maximum Relativebarshadow_correction = 1.381e-03
Minimum Relativebarshadow_correction = -2.871e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 18%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 35? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 37
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.872e-03 median = -6.466e-05 stdev = 5.611e-03
Maximum Relativebarshadow_correction = 1.789e-03
Minimum Relativebarshadow_correction = -2.886e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 19%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 37? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 38
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.905e-03 median = -6.214e-05 stdev = 5.665e-03
Maximum Relativebarshadow_correction = 2.042e-03
Minimum Relativebarshadow_correction = -2.930e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 19%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 38? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 39
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.041e-03 median = -6.262e-05 stdev = 5.974e-03
Maximum Relativebarshadow_correction = 1.176e-03
Minimum Relativebarshadow_correction = -2.788e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 39? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 41
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.895e-03 median = -6.464e-05 stdev = 5.638e-03
Maximum Relativebarshadow_correction = 1.679e-03
Minimum Relativebarshadow_correction = -2.888e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 19%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 41? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 53
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. 429.4560241214042 26.8976157966487 Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.168e-03 median = -6.273e-05 stdev = 6.031e-03
Maximum Relativebarshadow_correction = 1.761e-03
Minimum Relativebarshadow_correction = -2.824e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 26%
-> 3xtheshold = 18%
-> 5xtheshold = 11%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
*** WARNING: More than 10% of pixels have a median value greater than 5xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 53? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: FAILED
Working with slitlet 54
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. 426.2587209927364 26.903679487152 Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.166e-03 median = -6.667e-05 stdev = 6.019e-03
Maximum Relativebarshadow_correction = 1.585e-03
Minimum Relativebarshadow_correction = -2.815e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 26%
-> 3xtheshold = 18%
-> 5xtheshold = 11%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
*** WARNING: More than 10% of pixels have a median value greater than 5xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 54? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: FAILED
Working with slitlet 1
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. nan nan Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.022e-03 median = -6.624e-05 stdev = 5.944e-03
Maximum Relativebarshadow_correction = 1.209e-03
Minimum Relativebarshadow_correction = -2.936e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 1? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 2
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.998e-03 median = -6.297e-05 stdev = 5.904e-03
Maximum Relativebarshadow_correction = 1.782e-03
Minimum Relativebarshadow_correction = -2.922e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 2? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 3
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.885e-03 median = -6.028e-05 stdev = 5.643e-03
Maximum Relativebarshadow_correction = 1.703e-03
Minimum Relativebarshadow_correction = -2.868e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 19%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 3? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 4
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.939e-03 median = -5.839e-05 stdev = 5.720e-03
Maximum Relativebarshadow_correction = 1.743e-03
Minimum Relativebarshadow_correction = -2.875e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 19%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 4? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 5
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.070e-03 median = -6.476e-05 stdev = 6.004e-03
Maximum Relativebarshadow_correction = 1.519e-03
Minimum Relativebarshadow_correction = -2.908e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 5? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 12
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.984e-03 median = -5.549e-05 stdev = 5.783e-03
Maximum Relativebarshadow_correction = 1.209e-03
Minimum Relativebarshadow_correction = -2.851e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 12? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 13
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.069e-03 median = -5.870e-05 stdev = 5.989e-03
Maximum Relativebarshadow_correction = 1.744e-03
Minimum Relativebarshadow_correction = -2.906e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 26%
-> 3xtheshold = 18%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 13? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 20
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.930e-03 median = -5.659e-05 stdev = 5.715e-03
Maximum Relativebarshadow_correction = 1.938e-03
Minimum Relativebarshadow_correction = -2.900e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 19%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 20? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 22
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.064e-03 median = -6.398e-05 stdev = 5.940e-03
Maximum Relativebarshadow_correction = 2.135e-03
Minimum Relativebarshadow_correction = -2.875e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 10%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 22? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 23
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.853e-03 median = -6.602e-05 stdev = 5.603e-03
Maximum Relativebarshadow_correction = 1.440e-03
Minimum Relativebarshadow_correction = -2.852e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 19%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 23? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 24
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.015e-03 median = -6.569e-05 stdev = 5.841e-03
Maximum Relativebarshadow_correction = 1.784e-03
Minimum Relativebarshadow_correction = -2.835e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 10%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 24? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 28
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.845e-03 median = -6.542e-05 stdev = 5.594e-03
Maximum Relativebarshadow_correction = 1.789e-03
Minimum Relativebarshadow_correction = -2.914e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 19%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 28? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 30
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.026e-03 median = -6.313e-05 stdev = 5.846e-03
Maximum Relativebarshadow_correction = 1.936e-03
Minimum Relativebarshadow_correction = -2.923e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 10%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 30? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 34
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.782e-03 median = -6.478e-05 stdev = 5.480e-03
Maximum Relativebarshadow_correction = 1.829e-03
Minimum Relativebarshadow_correction = -2.852e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 17%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 34? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 36
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
nan nan
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.849e-03 median = -7.007e-05 stdev = 5.567e-03
Maximum Relativebarshadow_correction = 1.244e-03
Minimum Relativebarshadow_correction = -2.806e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 19%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 36? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 40
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
717.8478879652469 26.906201801445103
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.881e-03 median = -7.021e-05 stdev = 5.577e-03
Maximum Relativebarshadow_correction = 1.526e-03
Minimum Relativebarshadow_correction = -2.796e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 18%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 40? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 42
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
736.5492365260191 26.907388994041778
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.978e-03 median = -6.346e-05 stdev = 5.746e-03
Maximum Relativebarshadow_correction = 2.072e-03
Minimum Relativebarshadow_correction = -2.791e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 42? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 43
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
689.9349073679869 26.898072914723645
Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.042e-03 median = -6.358e-05 stdev = 5.829e-03
Maximum Relativebarshadow_correction = 1.221e-03
Minimum Relativebarshadow_correction = -2.884e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 11%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
*** WARNING: More than 10% of pixels have a median value greater than 5xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 43? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: FAILED
Working with slitlet 44
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
Calculation of barshadow correction done.
679.9641907876581 26.902628246867557
Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.989e-03 median = -6.600e-05 stdev = 5.740e-03
Maximum Relativebarshadow_correction = 1.406e-03
Minimum Relativebarshadow_correction = -2.910e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 10%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 44? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 45
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. 675.2201065606389 26.909022673391682 Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.057e-03 median = -5.880e-05 stdev = 5.986e-03
Maximum Relativebarshadow_correction = 1.425e-03
Minimum Relativebarshadow_correction = -2.889e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 45? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 46
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. 628.3528797143198 26.907387263499682 Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.046e-03 median = -6.672e-05 stdev = 5.988e-03
Maximum Relativebarshadow_correction = 1.793e-03
Minimum Relativebarshadow_correction = -2.787e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 46? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 47
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. 566.0835177748166 26.901105539942886 Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.014e-03 median = -6.387e-05 stdev = 5.813e-03
Maximum Relativebarshadow_correction = 1.517e-03
Minimum Relativebarshadow_correction = -2.902e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 10%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 47? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Working with slitlet 48 Slitlet name in fits file previous to barshadow and in barshadow output file are the same. Calculating barshadow correction... Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits Calculation of barshadow correction done. 561.7669238150397 26.903533880206133 Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.998e-03 median = -6.612e-05 stdev = 5.783e-03
Maximum Relativebarshadow_correction = 1.651e-03
Minimum Relativebarshadow_correction = -2.877e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 10%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 48? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 49
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. 510.5417110307708 26.89942162711025 Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.749e-03 median = -6.236e-05 stdev = 5.375e-03
Maximum Relativebarshadow_correction = 1.177e-03
Minimum Relativebarshadow_correction = -2.815e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 19%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 49? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 50
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. 525.6815486602569 26.89982581835418 Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.171e-03 median = -6.651e-05 stdev = 6.060e-03
Maximum Relativebarshadow_correction = 1.648e-03
Minimum Relativebarshadow_correction = -2.837e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 26%
-> 3xtheshold = 18%
-> 5xtheshold = 11%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
*** WARNING: More than 10% of pixels have a median value greater than 5xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 50? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: FAILED
Working with slitlet 51
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. 518.2363133126122 26.906766488227944 Creating final barshadow test plot...
Relative barshadow_correction : mean = -3.104e-03 median = -6.292e-05 stdev = 5.902e-03
Maximum Relativebarshadow_correction = 1.358e-03
Minimum Relativebarshadow_correction = -2.734e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 18%
-> 5xtheshold = 11%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
*** WARNING: More than 10% of pixels have a median value greater than 5xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 51? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: FAILED
Working with slitlet 52
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. 507.37795245035966 26.908367350122248 Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.997e-03 median = -7.102e-05 stdev = 5.697e-03
Maximum Relativebarshadow_correction = 1.044e-03
Minimum Relativebarshadow_correction = -2.715e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 19%
-> 5xtheshold = 10%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 52? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 55
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. nan nan Creating final barshadow test plot...
Relative barshadow_correction : mean = -2.784e-03 median = -7.856e-05 stdev = 5.219e-03
Maximum Relativebarshadow_correction = 1.028e-03
Minimum Relativebarshadow_correction = -2.143e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 24%
-> 3xtheshold = 20%
-> 5xtheshold = 7%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 55? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 56
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. nan nan Creating final barshadow test plot...
Relative barshadow_correction : mean = -1.870e-03 median = -1.437e-04 stdev = 3.586e-03
Maximum Relativebarshadow_correction = 1.258e-03
Minimum Relativebarshadow_correction = -1.043e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 20%
-> 3xtheshold = 20%
-> 5xtheshold = 0%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 56? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: PASSED
Working with slitlet 57
Slitlet name in fits file previous to barshadow and in barshadow output file are the same.
Calculating barshadow correction...
Reference file used for barshadow calculation: /grp/jwst/wit4/nirspec/CDP3/05_Other_Calibrations/5.3_BarShadow/referenceFilesBS-20160401/jwst-nirspec-mos1x1.bsrf.fits
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
Calculation of barshadow correction done. nan nan Creating final barshadow test plot...
Relative barshadow_correction : mean = -4.322e-03 median = -8.803e-05 stdev = 7.747e-03
Maximum Relativebarshadow_correction = 1.475e-03
Minimum Relativebarshadow_correction = -2.267e-02
Percentage of pixels where median of relative differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 17%
-> 5xtheshold = 17%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
*** WARNING: More than 10% of pixels have a median value greater than 5xthreshold!
* PASS/FAIL TEST: Is the median <= threshold for slit 57? PASSED
* Result of number of points greater than 3*threshold greater than 10%: FAILED
* Result of number of points greater than 5*threshold greater than 10%: FAILED
* Test of barshadow_correction for slitlet 6 PASSED.
* Test of barshadow_correction for slitlet 7 PASSED.
* Test of barshadow_correction for slitlet 8 PASSED.
* Test of barshadow_correction for slitlet 9 PASSED.
* Test of barshadow_correction for slitlet 10 PASSED.
* Test of barshadow_correction for slitlet 11 PASSED.
* Test of barshadow_correction for slitlet 14 PASSED.
* Test of barshadow_correction for slitlet 15 PASSED.
* Test of barshadow_correction for slitlet 16 PASSED.
* Test of barshadow_correction for slitlet 17 PASSED.
* Test of barshadow_correction for slitlet 18 PASSED.
* Test of barshadow_correction for slitlet 19 PASSED.
* Test of barshadow_correction for slitlet 21 PASSED.
* Test of barshadow_correction for slitlet 25 PASSED.
* Test of barshadow_correction for slitlet 26 PASSED.
* Test of barshadow_correction for slitlet 27 PASSED.
* Test of barshadow_correction for slitlet 29 PASSED.
* Test of barshadow_correction for slitlet 31 PASSED.
* Test of barshadow_correction for slitlet 32 PASSED.
* Test of barshadow_correction for slitlet 33 PASSED.
* Test of barshadow_correction for slitlet 35 PASSED.
* Test of barshadow_correction for slitlet 37 PASSED.
* Test of barshadow_correction for slitlet 38 PASSED.
* Test of barshadow_correction for slitlet 39 PASSED.
* Test of barshadow_correction for slitlet 41 PASSED.
* Test of barshadow_correction for slitlet 53 PASSED.
* Test of barshadow_correction for slitlet 54 PASSED.
* Test of barshadow_correction for slitlet 1 PASSED.
* Test of barshadow_correction for slitlet 2 PASSED.
* Test of barshadow_correction for slitlet 3 PASSED.
* Test of barshadow_correction for slitlet 4 PASSED.
* Test of barshadow_correction for slitlet 5 PASSED.
* Test of barshadow_correction for slitlet 12 PASSED.
* Test of barshadow_correction for slitlet 13 PASSED.
* Test of barshadow_correction for slitlet 20 PASSED.
* Test of barshadow_correction for slitlet 22 PASSED.
* Test of barshadow_correction for slitlet 23 PASSED.
* Test of barshadow_correction for slitlet 24 PASSED.
* Test of barshadow_correction for slitlet 28 PASSED.
* Test of barshadow_correction for slitlet 30 PASSED.
* Test of barshadow_correction for slitlet 34 PASSED.
* Test of barshadow_correction for slitlet 36 PASSED.
* Test of barshadow_correction for slitlet 40 PASSED.
* Test of barshadow_correction for slitlet 42 PASSED.
* Test of barshadow_correction for slitlet 43 PASSED.
* Test of barshadow_correction for slitlet 44 PASSED.
* Test of barshadow_correction for slitlet 45 PASSED.
* Test of barshadow_correction for slitlet 46 PASSED.
* Test of barshadow_correction for slitlet 47 PASSED.
* Test of barshadow_correction for slitlet 48 PASSED.
* Test of barshadow_correction for slitlet 49 PASSED.
* Test of barshadow_correction for slitlet 50 PASSED.
* Test of barshadow_correction for slitlet 51 PASSED.
* Test of barshadow_correction for slitlet 52 PASSED.
* Test of barshadow_correction for slitlet 55 PASSED.
* Test of barshadow_correction for slitlet 56 PASSED.
* Test of barshadow_correction for slitlet 57 PASSED.
*** Final result for barshadow test will be reported as PASSED ***
('* Barshadow validation test took ', '2.1057219386100767 minutes to finish.')
Did barshadow validation test passed? True
/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide( /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3440: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/numpy/core/_methods.py:181: RuntimeWarning: invalid value encountered in true_divide ret = um.true_divide(
